SNPJam Report for synC

Showing coding SNPs for SYNC (Gene ID: 81493)

Show all SNPs for this gene at dbSNP

This SNP viewer is in beta and your feedback is appreciated!

This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

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RS ID: 3806248 Link_out

Alleles: A/C

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
1 33161612

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_001161708 Link_out NP_001155180 Link_out 3 P [Pro] / P [Pro]
coding-synonymous NM_030786 Link_out NP_110413 Link_out 3 P [Pro] / P [Pro]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ACCGTGGTTGGGTGTGTGGAGGGGTGGATTGACAGAGTGGAGGGAGCAGACGAATGGCTGCTGACATCTAAGAACCTGAGGTAGTCT
AGGCCCATGGCTGCTGGCTCCAGAATTGCACCATCCTGGGATTGTGGCTGCCCTTTCACTTTCAATCATTTCTTTTGCAGGAAAACAAGA
GTAGAGGCCAATTCTCCTCTTCC A/C AAGAACTCTGGATCCCTAAATGAGGCAGAAGCCTTGAACCCAGAAGTTACTCTATCTTCAGA
GGGGTCCTTAAACCTCGAAGACATTCTCTACCTGGAGGACACAGGTGACCTTGATGAGACACTCTATGTGCAAGAGACTGAGAAGGCAGA
GGAGGCCCTGTATATTGAGGAGGCCATGCAGCCAGATGAGGCTCTGCA-3'

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RS ID: 3795424 Link_out

Alleles: A/C

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
1 33160644

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_001161708 Link_out NP_001155180 Link_out 2 E [Glu] / A [Ala]
missense NM_030786 Link_out NP_110413 Link_out 2 E [Glu] / A [Ala]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CTGGCTGCCTACAAGCTCCATGCCCAAGCAGAGCTGGAGAGAGATGGCCTAAGGGAGGAGATCCGGCTGGTCAAGCAGAAGCTTTTC
AAAGTGACAAAGGAATGTGTGGCCTACCAATACCAGCTGGAGTGCCGCCAGCAGGACGTGGCTCAGTTTGCCGATTTCCGGGAAGTGCTG
ACTACAAGGGCAACCCAGCTCTCAGAGGAACTGGCCCAGCTCCGGGATGCCTATCAGAAGCAGAAGGAGCAGCTGCGGCAACAACTAGAA
GCCCCTCCAAGCCAGAGGGATGGGCACTTTCTCCAGGAAAGCCGGCGACTCTCTGCCCAGTTTGAAAATCTCATGGCAGAGAGCCGCCAG
GACCTGGAGGAGGAGTATGAGCCTCAGTTCCTGCGGCTCCTAG A/C GAGGAAAGAAGCTGGGACCAAAGCTCTGCAGAGAACCCAGGC
TGAGATCCAGGAAATGAAGGAGGCTCTGAGACCCCTGCAAGCAGAGGCCCGGCAGCTCCGCCTGCAAAACAGGAACCTGGAGGACCAGAT
CGCACTTGTGAGGCAAAAACGAGATGAAGAGGTGCAGCAGTACAGGGTAGGCCCATTGGGCATGAAAAGAACTGAGGTCTTTTAACCTGG
GGAAAGAGTGGCCAGAGTCCAAGGTCTTTGGGGCTGAAAGATAGTGTCACATGTAGGAAGAAAAATTTGTTCTTTGGGGCCACGCAATTT
TTTCTCCATTCTTCATTCATTCAGGCCCATGCTAGGGACTAGAAGTTATCTGCACTGTTTTTTGTTTTTTTTTTTTTGAGATGGAGTC-3
'

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RS ID: 397205 Link_out

Alleles: C/T

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
1 33160510

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_001161708 Link_out NP_001155180 Link_out 1 A [Ala] / T [Thr]
missense NM_030786 Link_out NP_110413 Link_out 1 A [Ala] / T [Thr]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TTCTAGTCCCTAGCATGGGCCTGAATGAATGAAGAATGGAGAAAAAATTGCGTGGCCCCAAAGAACAAATTTTTCTTCCTACATGTG
ACACTATCTTTCAGCCCCAAAGACCTTGGACTCTGGCCACTCTTTCCCCAGGTTAAAAGACCTCAGTTCTTTTCATGCCCAATGGGCCTA
CCCTGTACTGCTGCACCTCTTCATCTCGTTTTTGCCTCACAAGTG C/T GATCTGGTCCTCCAGGTTCCTGTTTTGCAGGCGGAGCTGC
CGGGCCTCTGCTTGCAGGGGTCTCAGAGCCTCCTTCATTTCCTGGATCTCAGCCTGGGTTCTCTGCAGAGCTTTGGTCCCAGCTTCTTTC
CTCTCTAGGAGCCGCAGGAACTGAGGCTCATACTCCTCCTCCAGGTCCTGGCGGCTCTCTGCCATGAGATTTTCAAACTGGGCAGAGAGT
CGCCGGCTTTCCTGGAGAAAGTGCCCATCCCTCTGGCTTGGAGGGGCTTCTAGTTGTTGCCG-3'

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RS ID: 360042 Link_out

Alleles: C/T

Validation:

  • By cluster
  • By frequency
  • By 2 hit 2 allele
  • By hap map

Details:

Chromosome Reference Position
1 33160878

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_001161708 Link_out NP_001155180 Link_out 2 R [Arg] / L [Leu]
missense NM_030786 Link_out NP_110413 Link_out 2 R [Arg] / L [Leu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CACCTCTTCATCTCGTTTTTGCCTCACAAGTGCGATCTGGTCCTCCAGGTTCCTGTTTTGCAGGCGGAGCTGCCGGGCCTCTGCTTG
CAGGGGTCTCAGAGCCTCCTTCATTTCCTGGATCTCAGCCTGGGTTCTCTGCAGAGCTTTGGTCCCAGCTTCTTTCCTCTCTAGGAGCCG
CAGGAACTGAGGCTCATACTCCTCCTCCAGGTCCTGGCGGCTCTCTGCCATGAGATTTTCAAACTGGGCAGAGAGTCGCCGGCTTTCCTG
GAGAAAGTGCCCATCCCTCTGGCTTGGAGGGGCTTCTAGTTGTTGCCGCAGCTGCTCCTTCTGCTTCTGATAGGCATCCCGGAGCTGGGC
CAGTTCCTCTGAGAGCTGGGTTGCCCTTGTAGTCAGCACTTCC C/T GGAAATCGGCAAACTGAGCCACGTCCTGCTGGCGGCACTCCA
GCTGGTATTGGTAGGCCACACATTCCTTTGTCACTTTGAAAAGCTTCTGCTTGACCAGCCGGATCTCCTCCCTTAGGCCATCTCTCTCCA
GCTCTGCTTGGGCATGGAGCTTGTAGGCAGCCAGGATGTCTTGATGGACTTGCTGTACCTCCTGCAGGGCTGGTTCCCGGAGCAATACAA
GCTCATGGATGAGCTGATCCCTCTCCTCTTCCAGCTGGGCCACAGCTTGGACACACTGCTGGAAACGCCCCTCTAGCAATTCCAGGTCCT
CTATGCTCAGGTTCTCCTCCATGCTGGGGCTCTGCTCGGCTCTGAGGCTCTCCTCAGGGTTAGATTTCTCCGCCCTTGTGACTGTCTC-3
'

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RS ID: 360041 Link_out

Alleles: A/G

Validation:

  • By cluster
  • By frequency
  • By 2 hit 2 allele
  • By hap map

Details:

Chromosome Reference Position
1 33161212

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_001161708 Link_out NP_001155180 Link_out 1 V [Val] / L [Leu]
missense NM_030786 Link_out NP_110413 Link_out 1 V [Val] / L [Leu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GACACAGGTGACCTTGATGAGACACTCTATGTGCAAGAGACTGAGAAGGCAGAGGAGGCCCTGTATATTGAGGAGGCCATGCAGCCA
GATGAGGCTCTGCATGTGGAGGAGCCTGGGAATCCAGAGGAGACAGTGTGTGTGGAGGAAACCACGGAGCCAGATCGGATACAGTTTGTG
GAGGGGCCCGTGGAGCCAGGAAAGCCCACAAGCCCAGAGCACGTTGTTTATGAGGGAGAGACAGTCACAAGGGCGGAGAAATCTAACCCT
GAGGAGAGCCTCAGAGCCGAGCAGAGCCCCAGC A/G TGGAGGAGAACCTGAGCATAGAGGACCTGGAATTGCTAGAGGGGCGTTTCCA
GCAGTGTGTCCAAGCTGTGGCCCAGCTGGAAGAGGAGAGGGATCAGCTCATCCATGAGCTTGTATTGCTCCGGGAACCAGCCCTGCAGGA
GGTACAGCAAGTCCATCAAGACATCCTGGCTGCCTACAAGCTCCATGCCCAAGCAGAGCTGGAGAGAGATGGCCTAAGGGAGGAGATCCG
GCTGGTCAAGCAGAAGCTTTTCAAAGTGACAAAGGAATGTGTGGCCTACCAATACCAGCTGGAGTGCC-3'