SNPJam Report for VCAM1

Showing coding SNPs for VCAM1 (Gene ID: 7412)

Show all SNPs for this gene at dbSNP

This SNP viewer is in beta and your feedback is appreciated!

This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

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RS ID: 3783615 Link_out

Alleles: A/T

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
1 101203765

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_001078 Link_out NP_001069 Link_out 1 I [Ile] / L [Leu]
missense NM_080682 Link_out NP_542413 Link_out 1 I [Ile] / L [Leu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ATCTTTAGATCCATCATGACCATAGCAACCACCAACTGATTATTTGGATAATTCAGACAAACATGCATCTTGGGTCCTGATGGTCCT
TATCACTGCTTTGATTCCCTTCTCTTTGGAGAACTAGTTGTACTGTTATAATAAACATGTAACTGTTGTTATTAAATGCTATCTTTTTGT
ACTAGACATTAATTGCATCCATNTTGTTATTTTCCAGGAAGAGAAAACAACAAAGANTATTTTTCTCCTGAGCTTCTCGTGCTCTATTTT
GCATCCTCCTTAATAATACCTGCCATTGGAATG A/T TAATTTACTTTGCAAGAAAAGCCAACATGAAGGGGTCATATAGTCTTGTAGA
AGCACAGAANTCAAAAGTGTAGCTAATGCTTGATATGTTCAACTGGAGACACTATTTATCTGTGCAAATCCTTGATACTGCTCATCATTC
CTTGAGAAAAACAATGAGCTGAGAGGCAGACTTCCCTGAATGTATTGAACTTGGAAAGAAATGCCCATCTATGTCCCTTGCTGTGAGCAA
GAAGTCAAAGTAAAACTTGCTGCCTGAAGAACAGTAACTGCCATCAAGATGAGAGAACTGGAGGAGTT-3'

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RS ID: 3783613 Link_out

Alleles: C/G

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
1 101196787

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_001078 Link_out NP_001069 Link_out 2 G [Gly] / A [Ala]
missense NM_080682 Link_out NP_542413 Link_out 2 G [Gly] / A [Ala]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GCAAGATTGCATATTAAGAAGAAAAGAAATAAGTGAAAATTTATTACTCAATGACTGGATATACTAAGTAGTTTTTGTTTCTAACAT
TATTCATATATAATATCATAAATATGTCATTTATAAATACTGTCATTACTTATATATTGACAGTCATTCTATCCCAGGTGACTTAAAGCT
GTCATTTTTAGGCCTTTACATTTAATAAAGCTTAGCTCAATTTTTCCTTGAATATCAAGAATAAAAATCGTTTTTGCTTGCGATTTGCAG
CATTCCCTAGAGATCCAGAAATCGAGATGAGTG C/G TGGCCTCGTGAATGGGAGCTCTGTCACTGTAAGCTGCAAGGTTCCTAGCGTG
TACCCCCTTGACCGGCTGGAGATTGAATTACTTAAGGGGGAGACTATTCTGGAGAATATAGAGTTTTTGGAGGATACGGATATGAAATCT
CTAGAGAACAAAAGTTTGGAAATGACCTTCATCCCTACCATTGAAGATACTGGAAAAGCTCTTGTTTGTCAGGCTAAGTTACATATTGAT
GACATGGAATTCGAACCCAAACAAAGGCAGAGTACGCAAACACTTTATGTCAATGGTAAGTACATATG-3'

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RS ID: 3783612 Link_out

Alleles: A/G

Validation:

  • By frequency
  • By hap map
  • By cluster

Details:

Chromosome Reference Position
1 101194884

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
intron NM_080682 Link_out Not Applicable Not Applicable Not Applicable
missense NM_001078 Link_out NP_001069 Link_out 1 T [Thr] / A [Ala]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AAAGATCATATGTCAGAATGTGATGAAAAAAGAAAAGAATCTTATGTTCTTTTCATCTTGTTTTCCACCTGTGTCCCAGAGAAACCA
TTTACTGTTGAGATCTYCCCTGGACCCCGGATTGCTGCTCAGATTGGAGACTCAGTCATGTTGACATGTAGTGTCATGGGCTGTGAATCC
CCATCTTTCTCCTGGAGAACCCAGATAGACAGCCCTCTGAGCGGGAAGGTGAGGAGTGAGGGGACCAATTCCACGCTGACCCTGAGCCCT
GTGAGTTTTGAGAACGAACACTCTTATCTGTGC A/G CAGTGACTTGTGGACATAAGAAACTGGAAAAGGGAATCCAGGTGGAGCTCTA
CTGTAAGTGGTTTTCAGAATTGTTTACTGTTTTTTTTTTTCAGTTCTATTGGAAGAAAAAGAATGCAAGTCTGTGAAGTGCAATGAAATC
CTTATGTTTAGAAAAGGAATTTAGCCTTGTGAATTTTGTTCCTAAATCTGAATCAGAATGGTTTGATGCAATATAATTAGCTTAAATCTT
AAATATATATTACATATGTACACAGCACCCACAATCCTTGGTTTATGCCTTGTCAATACTCTCTCATC-3'

[Top]

RS ID: 3783611 Link_out

Alleles: C/T

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
1 101194687

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
intron NM_080682 Link_out Not Applicable Not Applicable Not Applicable
missense NM_001078 Link_out NP_001069 Link_out 2 S [Ser] / F [Phe]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GATACTCTATTATTGCTGTGAAGAGATAGCAACCTCTCTTGACAAATTTTTATCTATTCAATTTGTTAAATGAATGAATCAACAAAC
TATCRTGGTTTCATTCTTAAAAGATGTGGGCTCATWTCTGATGGTCCCAAGGTGGAAAAGAGTAATTTCTTCTTGGCATGGATATTAGCT
GAAAGGAGATCAGGAAAAATAAAGATCATATGTCAGAATGTGATGAAAAAAGAAAAGAATCTTATGTTCTTTTCATCTTGTTTTCCACCT
GTGTCCCAGAGAAACCATTTACTGTTGAGATCT C/T CCCTGGACCCCGGATTGCTGCTCAGATTGGAGACTCAGTCATGTTGACATGT
AGTGTCATGGGCTGTGAATCCCCATCTTTCTCCTGGAGAACCCAGATAGACAGCCCTCTGAGCGGGAAGGTGAGGAGTGAGGGGACCAAT
TCCACGCTGACCCTGAGCCCTGTGAGTTTTGAGAACGAACACTCTTATCTGTGCRCAGTGACTTGTGGACATAAGAAACTGGAAAAGGGA
ATCCAGGTGGAGCTCTACTGTAAGTGGTTTTCAGAATTGTTTACTGTTTTTTTTTTTCAGTTCTATT-3'

[Top]

RS ID: 3176879 Link_out

Alleles: A/G

Validation:

  • By cluster
  • By frequency
  • By submitter
  • By hap map

Details:

Chromosome Reference Position
1 101203827

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_001078 Link_out NP_001069 Link_out 3 K [Lys] / K [Lys]
coding-synonymous NM_080682 Link_out NP_542413 Link_out 3 K [Lys] / K [Lys]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TCTATTTGAATCCAAGTTTGTGGAAGCCAACAACTATCATCTTTAGATCCATCATGACCATAGCAACCACCAACTGATTATTTGGAT
AATTCAGACAAACATGCATCTTGGGTCCTGATGGTCCTTATCACTGCTTTGATTCCCTTCTCTTTGGAGAACTAGTTGTACTGTTATAAT
AAACATGTAACTGTTGTTATTAAATGCTATCTTTTTGTACTAGACATTAATTGCATCCATTTTGTTATTTTCCAGGAAGAGAAAACAACA
AAGACTATTTTTCTCCTGAGCTTCTCGTGCTCTATTTTGCATCCTCCTTAATAATACCTGCCATTGGAATGATAATTTACTTTGCAAGAA
AAGCCAACATGAAGGGGTCATATAGTCTTGTAGAAGCACAGAA A/G TCAAAAGTGTAGCTAATGCTTGATATGTTCAACTGGAGACAC
TATTTATCTGTGCAAATCCTTGATACTGCTCATCATTCCTTGAGAAAAACAATGAGCTGAGAGGCAGACTTCCCTGAATGTATTGAACTT
GGAAAGAAATGCCCATCTATGTCCCTTGCTGTGAGCAAGAAGTCAAAGTAAAACTTGCTGCCTGAAGAACAGTAACTGCCATCAAGATGA
GAGAACTGGAGGAGTTCCTTGATCTGTATATACAATAACATAATTTGTACATATGTAAAATAAAATTATGCCATAGCAAGATTGCTTAAA
ATAGCAACACTCTATATTTAGATTGTTAAAATAACTAGTGTTGCTTGGACTATTATAATTTAATGCATGTTAGGAAAATTTCACATTA-3
'

[Top]

RS ID: 3176878 Link_out

Alleles: C/T

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
1 101203698

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_001078 Link_out NP_001069 Link_out 3 D [Asp] / D [Asp]
coding-synonymous NM_080682 Link_out NP_542413 Link_out 3 D [Asp] / D [Asp]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CAGTTCTTTAGTAGATATTTTTATTTCCCCAAGCAAGTGCCTCTCTCCAATTCCTGTTCTTGCCTCTCTCCAATTCCTGTTCTTGTT
AAAAACTTGTACCCTCCCTTCCATTTTACAACTGAACCTGAATCTATTTGAATCCAAGTTTGTGGAAGCCAACAACTATCATCTTTAGAT
CCATCATGACCATAGCAACCACCAACTGATTATTTGGATAATTCAGACAAACATGCATCTTGGGTCCTGATGGTCCTTATCACTGCTTTG
ATTCCCTTCTCTTTGGAGAACTAGTTGTACTGTTATAATAAACATGTAACTGTTGTTATTAAATGCTATCTTTTTGTACTAGACATTAAT
TGCATCCATTTTGTTATTTTCCAGGAAGAGAAAACAACAAAGA C/T TATTTTTCTCCTGAGCTTCTCGTGCTCTATTTTGCATCCTCC
TTAATAATACCTGCCATTGGAATGATAATTTACTTTGCAAGAAAAGCCAACATGAAGGGGTCATATAGTCTTGTAGAAGCACAGAAGTCA
AAAGTGTAGCTAATGCTTGATATGTTCAACTGGAGACACTATTTATCTGTGCAAATCCTTGATACTGCTCATCATTCCTTGAGAAAAACA
ATGAGCTGAGAGGCAGACTTCCCTGAATGTATTGAACTTGGAAAGAAATGCCCATCTATGTCCCTTGCTGTGAGCAAGAAGTCAAAGTAA
AACTTGCTGCCTGAAGAACAGTAACTGCCATCAAGATGAGAGAACTGGAGGAGTTCCTTGATCTGTATATACAATAACATAATTTGTA-3
'