SNPJam Report for TRIM13

Showing coding SNPs for TRIM13 (Gene ID: 10206)

Show all SNPs for this gene at dbSNP

This SNP viewer is in beta and your feedback is appreciated!

This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

[Top]

RS ID: 116292134 Link_out

Alleles: A/T

Validation:

Not Completed

Details:

Chromosome Reference Position
13 50587153

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_052811 Link_out NP_434698 Link_out 3 T [Thr] / T [Thr]
coding-synonymous NM_005798 Link_out NP_005789 Link_out 3 T [Thr] / T [Thr]
coding-synonymous NM_213590 Link_out NP_998755 Link_out 3 T [Thr] / T [Thr]
coding-synonymous NM_001007278 Link_out NP_001007279 Link_out 3 T [Thr] / T [Thr]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GATGTGGATAAACTTTCTTTGCCTCAAGACACTGGCACATTCATTAGCAAGATTCCCTGGAGCTTTTATAAGTTATTTTTGCTAATC
CTTCTGCTTGGCCTTGTCATTGTCTTTGGTCCTACCATGTTCCTAGAATGGTCATTATTTGATGACCTGGCAACTTGGAAAGGCTGTCTT
TCAAACTTCAGTTCCTATCTGAC A/T AAAACAGCCGATTTCATAGAACAATCAGTTTTTTACTGGGAACAGGTGACAGATGGGTTTTT
CATTTTCAATGAAAGATTCAAGAATTTTACTTTGGTGGTACTGAACAATGTGGCAGAATTTGTGTGCAAATATAAACTATTATAAAATCT
GTTTCAAGTATGCAGTTTTCTTTTGTTAGAAATTGTTAGAGAATAGAG-3'

[Top]

RS ID: 113312136 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
13 50587295

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_052811 Link_out NP_434698 Link_out 1 L [Leu] / L [Leu]
coding-synonymous NM_005798 Link_out NP_005789 Link_out 1 L [Leu] / L [Leu]
coding-synonymous NM_213590 Link_out NP_998755 Link_out 1 L [Leu] / L [Leu]
coding-synonymous NM_001007278 Link_out NP_001007279 Link_out 1 L [Leu] / L [Leu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TATTTGATGACCTGGCAACTTGGAAAGGCTGTCTTTCAAACTTCAGTTCCTATCTGACTAAAACAGCCGATTTCATAGAACAATCAG
TTTTTTACTGGGAACAGGTGACAGATGGGTTTTTCATTTTCAATGAAAGATTCAAGAATTTTACTTTGGTGGTACTGAACAATGTGGCAG
AATTTGTGTGCAAATATAAACTA C/T TATAAAATCTGTTTCAAGTATGCAGTTTTCTTTTGTTAGAAATTGTTAGAGAATAGAGAGTG
GTAATTCAGATTTGGTCAACGATTCTAGTCACATATTTTCCTCCAAAAGTATTCCTTCCAAAAATAATCTATACATGTTCAAATTAGGTA
GCATAAAGATAAAAGTGAAATTTAGTAGTATAGGCCTGAACCTTTTTT-3'

[Top]

RS ID: 112950191 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
13 50590112

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_173605 Link_out NP_775876 Link_out 3 M [Met] / I [Ile]
missense NM_199464 Link_out NP_955751 Link_out 3 M [Met] / I [Ile]
utr-3 NM_052811 Link_out Not Applicable Not Applicable Not Applicable
utr-3 NM_005798 Link_out Not Applicable Not Applicable Not Applicable
utr-3 NM_213590 Link_out Not Applicable Not Applicable Not Applicable
utr-3 NM_001007278 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GTTGATCTCTTAAACCCATACCTGCTACAGCCAAGACCTGCTCTTGTGGAGGTACATTTCCTAAGCCGGAACACTCAAGCTTTTTTC
AGGGTGTTTGGCTCTTGCAGCAAAACAATTGAGATGCTAACAGGGAGGATTACAGTGTTTACAGAACAACCTTCAGCGCCGACCTGGAAT
GGTAACTTTTTCCCTCCTCAGAT A/G ACCTTACTTCCACTGCCTCCACAAAGACCTTCTTACCATGACCTGGTTTTCCAGTGTGGTTC
TGACAGCACTACTGATAACCAAACTGGAGTCAGGTATTTTGTACTTTGCAGTATTTCTCTTGTATACCAGTTTGTGATGTTTTCTCTAAA
AACTTGAAGTTCCTCAGGCCTGTAACTTCTGGAAAAGATGATTATTCA-3'

[Top]

RS ID: 112391099 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
13 50586566

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_052811 Link_out NP_434698 Link_out 1 L [Leu] / L [Leu]
coding-synonymous NM_005798 Link_out NP_005789 Link_out 1 L [Leu] / L [Leu]
coding-synonymous NM_213590 Link_out NP_998755 Link_out 1 L [Leu] / L [Leu]
coding-synonymous NM_001007278 Link_out NP_001007279 Link_out 1 L [Leu] / L [Leu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ACTTGGGGCAGCCTCTCAACATTTTCTGCCTGACTGATATGCAGCTGATTTGTGGGATCTGTGCTACTCGTGGGGAGCACACCAAAC
ATGTCTTCTGTTCTATTGAAGATGCCTATGCTCAGGAAAGGGATGCCTTTGAGTCCCTCTTCCAGAGCTTTGAGACCTGGCGTCGGGGAG
ATGCTCTTTCTCGCTTGGATACC C/T TGGAAACTAGTAAGAGGAAATCCCTACAGTTACTGACTAAAGATTCAGATAAAGTGAAGGAA
TTTTTTGAGAAGTTACAACACACACTGGATCAAAAGAAGAATGAAATTCTGTCTGACTTTGAGACCATGAAACTTGCTGTTATGCAAGCA
TATGACCCAGAGATCAACAAACTCAACACCATCTTGCAGGAGCAACGG-3'

[Top]

RS ID: 111820938 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
13 50586752

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_052811 Link_out NP_434698 Link_out 1 L [Leu] / L [Leu]
coding-synonymous NM_005798 Link_out NP_005789 Link_out 1 L [Leu] / L [Leu]
coding-synonymous NM_213590 Link_out NP_998755 Link_out 1 L [Leu] / L [Leu]
coding-synonymous NM_001007278 Link_out NP_001007279 Link_out 1 L [Leu] / L [Leu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CTCGCTTGGATACCTTGGAAACTAGTAAGAGGAAATCCCTACAGTTACTGACTAAAGATTCAGATAAAGTGAAGGAATTTTTTGAGA
AGTTACAACACACACTGGATCAAAAGAAGAATGAAATTCTGTCTGACTTTGAGACCATGAAACTTGCTGTTATGCAAGCATATGACCCAG
AGATCAACAAACTCAACACCATC C/T TGCAGGAGCAACGGATGGCCTTTAACATTGCTGAGGCTTTCAAAGATGTGTCAGAACCCATT
GTATTTCTGCAACAGATGCAGGAGTTTAGAGAGAAAATCAAAGTAATCAAGGAAACTCCTTTACCTCCCTCTAATTTGCCTGCAAGCCCT
TTAATGAAGAACTTTGATACCAGTCAGTGGGAAGACATAAAACTAGTC-3'

[Top]

RS ID: 79753747 Link_out

Alleles: A/C

Validation:

Not Completed

Details:

Chromosome Reference Position
13 50590150

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_173605 Link_out NP_775876 Link_out 2 H [His] / P [Pro]
missense NM_199464 Link_out NP_955751 Link_out 2 H [His] / P [Pro]
utr-3 NM_052811 Link_out Not Applicable Not Applicable Not Applicable
utr-3 NM_005798 Link_out Not Applicable Not Applicable Not Applicable
utr-3 NM_213590 Link_out Not Applicable Not Applicable Not Applicable
utr-3 NM_001007278 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TACAGTGTTTACAGAACAACCTTCAGCGCCGACCTGGAATGGTAACTTTTTCCCTCCTCAGATGACCTTACTTCCACTGCCTCCACA
AAGACCTTCTTACC A/C TGACCTGGTTTTCCAGTGTGGTTCTGACAGCACTACTGATAACCAAACTGGAGTCAGGTATTTTGTACTTT
GCAGTATTTCTCTTGTATACCAGTTTGTGA-3'

[Top]

RS ID: 76000535 Link_out

Alleles: G/T

Validation:

  • By cluster

Details:

Chromosome Reference Position
13 50587249

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_052811 Link_out NP_434698 Link_out 3 L [Leu] / F [Phe]
missense NM_005798 Link_out NP_005789 Link_out 3 L [Leu] / F [Phe]
missense NM_213590 Link_out NP_998755 Link_out 3 L [Leu] / F [Phe]
missense NM_001007278 Link_out NP_001007279 Link_out 3 L [Leu] / F [Phe]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GGCCTTGTCATTGTCTTTGGTCCTACCATGTTCCTAGAATGGTCATTATTTGATGACCTGGCAACTTGGAAAGGCTGTCTTTCAAAC
TTCAGTTCCTATCTGACTAAAACAGCCGATTTCATAGAACAATCAGTTTTTTACTGGGAACAGGTGACAGATGGGTTTTTCATTTTCAAT
GAAAGATTCAAGAATTTTACTTT G/T GTGGTACTGAACAATGTGGCAGAATTTGTGTGCAAATATAAACTATTATAAAATCTGTTTCA
AGTATGCAGTTTTCTTTTGTTAGAAATTGTTAGAGAATAGAGAGTGGTAATTCAGATTTGGTCAACGATTCTAGTCACATATTTTCCTCC
AAAAGTATTCCTTCCAAAAATAATCTATACATGTTCAAATTAGGTAGC-3'

[Top]

RS ID: 75430191 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
13 50586799

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_052811 Link_out NP_434698 Link_out 3 D [Asp] / D [Asp]
coding-synonymous NM_005798 Link_out NP_005789 Link_out 3 D [Asp] / D [Asp]
coding-synonymous NM_213590 Link_out NP_998755 Link_out 3 D [Asp] / D [Asp]
coding-synonymous NM_001007278 Link_out NP_001007279 Link_out 3 D [Asp] / D [Asp]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CTGACTAAAGATTCAGATAAAGTGAAGGAATTTTTTGAGAAGTTACAACACACACTGGATCAAAAGAAGAATGAAATTCTGTCTGAC
TTTGAGACCATGAAACTTGCTGTTATGCAAGCATATGACCCAGAGATCAACAAACTCAACACCATCTTGCAGGAGCAACGGATGGCCTTT
AACATTGCTGAGGCTTTCAAAGA C/T GTGTCAGAACCCATTGTATTTCTGCAACAGATGCAGGAGTTTAGAGAGAAAATCAAAGTAAT
CAAGGAAACTCCTTTACCTCCCTCTAATTTGCCTGCAAGCCCTTTAATGAAGAACTTTGATACCAGTCAGTGGGAAGACATAAAACTAGT
CGATGTGGATAAACTTTCTTTGCCTCAAGACACTGGCACATTCATTAG-3'

[Top]

RS ID: 74331064 Link_out

Alleles: A/C

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
13 50587157

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_052811 Link_out NP_434698 Link_out 1 T [Thr] / P [Pro]
missense NM_005798 Link_out NP_005789 Link_out 1 T [Thr] / P [Pro]
missense NM_213590 Link_out NP_998755 Link_out 1 T [Thr] / P [Pro]
missense NM_001007278 Link_out NP_001007279 Link_out 1 T [Thr] / P [Pro]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TGGATAAACTTTCTTTGCCTCAAGACACTGGCACATTCATTAGCAAGATTCCCTGGAGCTTTTATAAGTTATTTTTGCTAATCCTTC
TGCTTGGCCTTGTCATTGTCTTTGGTCCTACCATGTTCCTAGAATGGTCATTATTTGATGACCTGGCAACTTGGAAAGGCTGTCTTTCAA
ACTTCAGTTCCTATCTGACTAAA A/C CAGCCGATTTCATAGAACAATCAGTTTTTTACTGGGAACAGGTGACAGATGGGTTTTTCATT
TTCAATGAAAGATTCAAGAATTTTACTTTGGTGGTACTGAACAATGTGGCAGAATTTGTGTGCAAATATAAACTATTATAAAATCTGTTT
CAAGTATGCAGTTTTCTTTTGTTAGAAATTGTTAGAGAATAGAGAGTG-3'

[Top]

RS ID: 34984454 Link_out

Alleles: G/T

Validation:

Not Completed

Details:

Chromosome Reference Position
13 50587056

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_052811 Link_out NP_434698 Link_out 2 V [Val] / G [Gly]
missense NM_005798 Link_out NP_005789 Link_out 2 V [Val] / G [Gly]
missense NM_213590 Link_out NP_998755 Link_out 2 V [Val] / G [Gly]
missense NM_001007278 Link_out NP_001007279 Link_out 2 V [Val] / G [Gly]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AGGAGCAACGGATGGCCTTTAACATTGCTGAGGCTTTCAAAGATGTGTCAGAACCCATTGTATTTCTGCAACAGATGCAGGAGTTTA
GAGAGAAAATCAAAGTAATCAAGGAAACTCCTTTACCTCCCTCTAATTTGCCTGCAAGCCCTTTAATGAAGAACTTTGATACCAGTCAGT
GGGAAGACATAAAACTAGTCGATGTGGATAAACTTTCTTTGCCTCAAGACACTGGCACATTCATTAGCAAGATTCCCTGGAGCTTTTATA
AGTTATTTTTGCTAATCCTTCTGCTTGGCCTTG G/T CATTGTCTTTGGTCCTACCATGTTCCTAGAATGGTCATTATTTGATGACCTG
GCAACTTGGAAAGGCTGTCTTTCAAACTTCAGTTCCTATCTGACTAAAACAGCCGATTTCATAGAACAATCAGTTTTTTACTGGGAACAG
GTGACAGATGGGTTTTTCATTTTCAATGAAAGATTCAAGAATTTTACTTTGGTGGTACTGAACAATGTGGCAGAATTTGTGTGCAAATAT
AAACTATTATAAAATCTGTTTCAAGTATGCAGTTTTCTTTTGTTAGAAATTGTTAGAGAATAGAGAGT-3'

[Top]

RS ID: 34905525 Link_out

Alleles: -/G

Validation:

Not Completed

Details:

Chromosome Reference Position
13 50590040

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
frameshift NM_199464 Link_out NP_955751 Link_out 3 T [Thr] / T [Thr]
frameshift NM_173605 Link_out NP_775876 Link_out 3 T [Thr] / T [Thr]
utr-3 NM_052811 Link_out Not Applicable Not Applicable Not Applicable
utr-3 NM_005798 Link_out Not Applicable Not Applicable Not Applicable
utr-3 NM_213590 Link_out Not Applicable Not Applicable Not Applicable
utr-3 NM_001007278 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AGAGACCAAGAATTCAAGATGGTTGGTGGCCAGATTTTTGTAGACAGAGATGGTGATTTGTTTAGTTTCATCTTAGATTTTTTGAGA
ACTCACCAGCTTTTATTACCCACTGAATTTTCAGACTATCTTAGGCTTCAGAGAGAGGCTCTTTTCTATGAACTTCGTTCTCTAGTTGAT
CTCTTAAACCCATACCTGCTACAGCCAAGACCTGCTCTTGTGGAGGTACATTTCCTAAGCCGGAACACTCAAGCTTTTTTCAGGGTGTTT
GGCTCTTGCAGCAAAACAATTGAGATGCTAACA -/G GGGAGGATTACAGTGTTTACAGAACAACCTTCAGCGCCGACCTGGAATGGTA
ACTTTTTCCCTCCTCAGATGACCTTACTTCCACTGCCTCCACAAAGACCTTCTTACCATGACCTGGTTTTCCAGTGTGGTTCTGACAGCA
CTACTGATAACCAAACTGGAGTCAGGTATTTTGTACTTTGCAGTATTTCTCTTGTATACCAGTTTGTGATGTTTTCTCTAAAAACTTGAA
GTTCCTCAGGCCTGTAACTTCTGGAAAAGATGATTATTCAAAATAATGTTTTGGGGTAACCAGTGGAG-3'

[Top]

RS ID: 12583744 Link_out

Alleles: A/G

Validation:

  • By frequency
  • By hap map
  • By cluster

Details:

Chromosome Reference Position
13 50589871

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_173605 Link_out NP_775876 Link_out 2 R [Arg] / K [Lys]
missense NM_199464 Link_out NP_955751 Link_out 2 R [Arg] / K [Lys]
utr-3 NM_052811 Link_out Not Applicable Not Applicable Not Applicable
utr-3 NM_005798 Link_out Not Applicable Not Applicable Not Applicable
utr-3 NM_213590 Link_out Not Applicable Not Applicable Not Applicable
utr-3 NM_001007278 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TTATAGGTTGATTTCCTAAGTGTGGCTGATGGTAGCCTCTAGTTTGAAGTGAGGGAAGAATGAGTAGTCAGGAACTGGTCACTTTGA
ATGTGGGAGGGAAGATATTCACGACAAGGTTTTCTACGATAAAGCAGTTTCCTGCTTCTCGTTTGGCACGCATGTTAGATGGCAGAGACC
AAGAATTCAAGATGGTTGGTGGCCAGATTTTTGTAGACAGAGATGGTGATTTGTTTAGTTTCATCTTAGATTTTTTGAGAACTCACCAGC
TTTTATTACCCACTGAATTTTCAGACTATCTTA A/G GCTTCAGAGAGAGGCTCTTTTCTATGAACTTCGTTCTCTAGTTGATCTCTTA
AACCCATACCTGCTACAGCCAAGACCTGCTCTTGTGGAGGTACATTTCCTAAGCCGGAACACTCAAGCTTTTTTCAGGGTGTTTGGCTCT
TGCAGCAAAACAATTGAGATGCTAACAGGGAGGATTACAGTGTTTACAGAACAACCTTCAGCGCCGACCTGGAATGGTAACTTTTTCCCT
CCTCAGATGACCTTACTTCCACTGCCTCCACAAAGACCTTCTTACCATGACCTGGTTTTCCAGTGTGG-3'

[Top]

RS ID: 3208983 Link_out

Alleles: A/G

Validation:

  • By hap map

Details:

Chromosome Reference Position
13 50586254

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_052811 Link_out NP_434698 Link_out 1 E [Glu] / K [Lys]
missense NM_005798 Link_out NP_005789 Link_out 1 E [Glu] / K [Lys]
missense NM_213590 Link_out NP_998755 Link_out 1 E [Glu] / K [Lys]
missense NM_001007278 Link_out NP_001007279 Link_out 1 E [Glu] / K [Lys]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GGAATTCCTTGTGGAGACCAGCTCCATTCAAGTGTCCTACATGCCGTAAG A/G AAACTTCAGCTACTGGAATTAATAGCCTGCAG
GTTAATTACTCCCTGAAG-3'

[Top]

RS ID: 1801421 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
13 50586269

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_052811 Link_out NP_434698 Link_out 1 G [Gly] / R [Arg]
missense NM_005798 Link_out NP_005789 Link_out 1 G [Gly] / R [Arg]
missense NM_213590 Link_out NP_998755 Link_out 1 G [Gly] / R [Arg]
missense NM_001007278 Link_out NP_001007279 Link_out 1 G [Gly] / R [Arg]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ATGCCGTAAGAANACTTCAGCTACT A/G GAATTAATAGCCTGCAGGTTAATTA-3'

[Top]

RS ID: 1056543 Link_out

Alleles: C/G

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
13 50587140

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_052811 Link_out NP_434698 Link_out 2 S [Ser] / T [Thr]
missense NM_005798 Link_out NP_005789 Link_out 2 S [Ser] / T [Thr]
missense NM_213590 Link_out NP_998755 Link_out 2 S [Ser] / T [Thr]
missense NM_001007278 Link_out NP_001007279 Link_out 2 S [Ser] / T [Thr]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TTGCCTGCAAGCCCTTTAATGAAGAACTTTGATACCAGTCAGTGGGAAGACATAAAACTAGTCGATGTGGATAAACTTTCTTTGCCT
CAAGACACTGGCACATTCATTAGCAAGATTCCCTGGAGCTTTTATAAGTTATTTTTGCTAATCCTTCTGCTTGGCCTTGTCATTGTCTTT
GGTCCTACCATGTTCCTAGAATGGTCATTATTTGATGACCTGGCAACTTGGAAAGGCTGTCTTTCAAACTTCA C/G TTCCTATCTGAC
TAAAACAGCCGATTTCATAGAACAATCAGTTTTTTACTGGGAACAGGTGACAGATGGGTTTTTCATTTTCAATGAAAGATTCAAGAATTT
TACTTTGGTGGTACTGAACAATGTGGCAGAATTTGTGTGCAAATATAAACTATTATAAAATCTGTTTCAAGTATGCAGTTTTCTTTTGTT
AGAAATTGTTAGAGAATAGAGAGTGGTAATTCAGATTTGGTCAACGATTCTAGTCACA-3'