SNPJam Report for TOP1

Showing coding SNPs for TOP1 (Gene ID: 7150)

Show all SNPs for this gene at dbSNP

This SNP viewer is in beta and your feedback is appreciated!

This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

[Top]

RS ID: 79787987 Link_out

Alleles: A/C

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
20 39709818

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_003286 Link_out NP_003277 Link_out 1 P [Pro] / T [Thr]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ACTATTACTCTTTGGTCTGACCTTCATTATTTTCTCTATTTCTGTTAGTCTTGACCGTAGAATGCCCAGCCAAGAATAACAGTGATT
ACTCTTGCCATGGAGGCATCCAAGAGTTTGTAGGTCTCCTATGAGTGAGAACTCCTGAATCATAATTATGTTAACTGTGTATTCATGTTC
CCCTTTCTAGTGCTGATTATAAA A/C CTAAGAAAATTAAAACAGAAGATACCAAGAAGGAGAAGAAAAGAAAACTAGAAGAAGAAGAG
GTTAGTAAAGAGACTTAGGTCCTTTGGGGCTTGAGTTTGGAAGTGGGAGTTTTCCAGTAAGCAACTTCTTAAGACAAATGAGTTTTAGAT
ATTTATTGGCTTGTTATAACATTAGGGAAAACAAATTTAATAAGTGGT-3'

[Top]

RS ID: 78595369 Link_out

Alleles: A/C

Validation:

  • By frequency

Details:

Chromosome Reference Position
20 39713164

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_003286 Link_out NP_003277 Link_out 3 N [Asn] / K [Lys]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AAATGAGAGGAGTACTAAGATCTTCTTTAGTTCTAATACTCTATGATTACAATTTTTCTTCCTCATGGCTCCCAAAAACTGCCTCCA
GAAGTGTGATCAGTCTTTATTTAAGTGCTTTCTCACCATGTTTCTTTGTAGGATGGTAAATTGAAAAAACCCAAGAATAAAGATAAAGAT
AAAAAAGTTCCTGAGCCAGATAA A/C AAGAAAAAGAAGCCGAAGAAAGAAGAGGAACAGAAGTGGAAATGGTAACATCTCAGCACTGG
GTTAAAATGCCACCTTTTTTATTGCATATCCTTACGAAGCAAGAGTATTGAGTTATTAAAATTAATATCCTGATATTTGGGGGGAAATAC
TTTAAACAATTTCTCTAGAGTAACTTTCTGAAGTAAGTTTTCCAACTT-3'

[Top]

RS ID: 61756256 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
20 39713188

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_003286 Link_out NP_003277 Link_out 3 E [Glu] / E [Glu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CTTTAGTTCTAATACTCTATGATTACAATTTTTCTTCCTCATGGCTCCCAAAAACTGCCTCCAGAAGTGTGATCAGTCTTTATTTAA
GTGCTTTCTCACCATGTTTCTTTGTAGGATGGTAAATTGAAAAAACCCAAGAATAAAGATAAAGATAAAAAAGTTCCTGAGCCAGATAAC
AAGAAAAAGAAGCCGAAGAAAGA A/G GAGGAACAGAAGTGGAAATGGTAACATCTCAGCACTGGGTTAAAATGCCACCTTTTTTATTG
CATATCCTTACGAAGCAAGAGTATTGAGTTATTAAAATTAATATCCTGATATTTGGGGGGAAATACTTTAAACAATTTCTCTAGAGTAAC
TTTCTGAAGTAAGTTTTCCAACTTCTAGTGAAATCATTAACTGGTTCT-3'

[Top]

RS ID: 61756255 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
20 39704896

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_003286 Link_out NP_003277 Link_out 1 H [His] / Y [Tyr]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CTGTTTGTTTAAGTACTGTAAGTTTCCACGGTTCATGTTATCTTAGGATATCTTGTGAAACGAATCCTTGTGGTCCCTACTCTGGGC
TAACGCTTTGTGACTTAACTTTTTACAGTGAACATAAAGATTCTGAAAAGAAACACAAAGAGAAGGAGAAGACCAAACACAAAGATGGAA
GCTCAGAAAAGCATAAAGACAAA C/T ATAAAGACAGAGACAAGGAAAAACGAAAAGAGGAAAAGGTACAGAGTTTTCTAGTAGGGGAG
GAAGGAACGTGGATGCACTTTTGTTTACCTTTGAAAGCAGATATCTTAATTGCATAGTAAGATCCCTTGGTCTTGAAGTGAAAGGTTTCT
TGTCAGGAGAATTTAGAGCAAACTGTAGTCTTAAACTATAAAAACTAA-3'

[Top]

RS ID: 61751055 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
20 39742701

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_003286 Link_out NP_003277 Link_out 2 H [His] / R [Arg]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AGCGGACACTGTGGGCTGCTGCTCACTTCGTGTGGAGCACATCAATCTAC A/G CCCAGAGTTGGATGGTCAGGAATATGTGGTAG
AGTTTGACTTCCTCGGGA-3'

[Top]

RS ID: 60545547 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
20 39742764

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_003286 Link_out NP_003277 Link_out 2 R [Arg] / K [Lys]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CATGTCTCTTCCATTCATGCTCATCTTTTCTTTCTTTCCTGGGCAGCTTGCTCTGAGAGCAGGCAATGAAAAGGAGGAAGGAGAAAC
AGCGGACACTGTGGGCTGCTGCTCACTTCGTGTGGAGCACATCAATCTACACCCAGAGTTGGATGGTCAGGAATATGTGGTAGAGTTTGA
CTTCCTCGGGAAGGACTCCATCA A/G ATACTATAACAAGGTCCCTGTTGAGAAACGAGTAAGTTAATGTACCTGTACTGTCTGACTTG
TTTTCCATTATTCAACAAGCATGGGTTGACTGCTTTTTTGTGTGCTTTGCACTTTGCTGGGCACCAGCAAAAGTGACTTGAGACAGGCAA
CATGGCACATGCCTGTAGACCCAGCTATTCAGAAGGCTGAGACAGGAGGATCACTGGAGACCAAAAGTTTGAGGCTGTAGTGTGCTGTGA
TCACACCTGTGAATAGCCACTGTACTCCAGCCTGGGCAAAATAGTGAGACCTTGCCTCTCATATTAAAATAAATAAAAATAAATGACTTG
AAAGAGGGGAGAGGTATTATTTGATATCTTGTGTACCTC-3'

[Top]

RS ID: 56111014 Link_out

Alleles: A/G

Validation:

  • By cluster

Details:

Chromosome Reference Position
20 39751885

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_003286 Link_out NP_003277 Link_out 2 R [Arg] / Q [Gln]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GTGCAAGAAGTGGGGTGTCCCAATTGAGAAGATTTACAACAAAACCCAGC A/G GGAGAAGTTTGCCTGGGCCATTGACATGGCTG
ATGAAGACTATGAGTTTTAGCCAGTCTC-3'

[Top]

RS ID: 35905808 Link_out

Alleles: A/G

Validation:

  • By cluster

Details:

Chromosome Reference Position
20 39690119

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_003286 Link_out NP_003277 Link_out 3 K [Lys] / K [Lys]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TCCCCATATTAGTAACTTGTCTTGATTGTAGAAGCAGGCTAATGGGAGCTTTGTCTGGGCTTCTTTGTGAAAGCTTTTTTTTTCAGT
GGCATGTGCTATTATGCCTACCATGCCATTTGAATCCTGTCATTGTACTTCTTGACCAGCTTGTCAAGGTAGGCATACAGAAGATAGCTC
ATGACTCCTGTTAACTGACTCATCTCTTATGGTTGCAGATTCTCATAAACACAAAGATAAACACAAAGATCGAGAACACCGGCACAAAGA
ACACAAGAAGGAGAAGGACCGGGAAAAGTCCAA A/G CATAGCAACAGGTAAGGGTGGAATCAAGCAAGTCCCTCATCATTCAGCAGTG
GGTTGGCCATTGCTTGGCTTACCTGGAATAGGTCTTAACTTGAGCTACATGTAAAGATAGCAAAGTAAGTAGAAACTGTATTTGATCCTA
GAGTTGCTATGAGGATGGCCATGATTTAGGCCTTAAATGGGATGCCATTGTTCAGATCAAGATGTATAAAGCAAGTATGTTTAATTTTCT
TTTAATATATACCTCATTAAAAATACAGTTGTTCACTAAGATAGGTAAGGATTCATTGTGACACATGA-3'

[Top]

RS ID: 34195416 Link_out

Alleles: -/C

Validation:

Not Completed

Details:

Chromosome Reference Position
20 39725977

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
frameshift NM_003286 Link_out NP_003277 Link_out 2 R [Arg] / T [Thr]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GAATTTGTACAAGTAGATATAAATCAGTATGTTGTCTTTGTTGTTGTTGCTACTATGTGTCACCAGACCTTTATATACCATGAGAAG
GCAAACCATTATTAAAGAGAATTCGCTAGCCCTGGGTATTTATGCTTAGAACATGAATACTATACCTCACTTTTTGGAACCACTTTTTTC
TCTAGGTAAAGTCATGAAGCTGAGCCCCAAAGCAGAGGAAGTAGCTACGTTCTTTGCAAAAATGCTCGACCATGAATATACTACCAAGGA
AATATTTAGGAAAAATTTCTTTAAAGACTGGAG -/C AAAGGTACTGTAGCCCATGTGTTAATATCCTAGTACCTTGCAAAACAATCAA
GTACTAAGTAATAAATTATCATTTTGCAAAACATTTCCTGATGTAAAATTTGAGTTGTATGGATTTTGTTGTATTTAAACTTGCGTATTT
TTTGTCTTCATTTACTATATTATGTAGGGTTTCTGTCCAACAAGAGTACTTGTATATCTTTGCTATTGGCTCTCATGTGATGGCAGGTAG
GTGGGGGTTATCAGATTAGGCCAAACAGAAAACCTCAACTCCAGTTGCGCACAGGAAAGTTTGTCGCT-3'

[Top]

RS ID: 34182691 Link_out

Alleles: -/T

Validation:

Not Completed

Details:

Chromosome Reference Position
20 39666169

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
frameshift XM_001721143 Link_out XP_001721195 Link_out 3 Not Applicable
intron NM_003286 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GATGTGACTAATTTCTCAACCATTTAATAGAATTATGGATTTTCTATTAAAAATAACTTGACCCTTTTCGATGCATTTAATAAAATG
CCAAGTTCATTATTTGTTAATTTTTTAAAACCACAAAATTCAATATGTCTTGTGTCAGCATATTTTTTCAAAGGCCACTATTTTACTTCT
CCCCCAAAACGTTTTTAAATTAAACAGAGAACTCTCAAAGCACCTGAGAATTACTTCAGTTTTTCATTTATTCAAATAGTTGCTTAAAGT
GACCAACTTGGTTTTCTTTGAAATAGTAATTCT -/T GGGAATAAGAATACCTTAAATAATATAATAAAGCTTATGTGTGAGAATTTAG
TACCAAATGCCGTGTTAACAGTTATGCGTGAGTATAGGCATTTGGGAGATTCCATGAAAAAATTTGATAAAGTCAGTAGAAATTTCAGTA
ATGGCTCATAAGTCTAGCTAATGCTGAATATTGAATTGCCTTGAATTTGTTTTTTTGGAAGTGTTACTTAAAGGAAATAAACAAAAGTCA
TTTAAGGATGTGTTCACTAGTGTTCATTAGGTTTAAGCCAAATGGATCTTAGTAGAGATCTTACGCCA-3'

[Top]

RS ID: 17178365 Link_out

Alleles: A/G

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
20 39666261

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
intron NM_003286 Link_out Not Applicable Not Applicable Not Applicable
missense XM_001721143 Link_out XP_001721195 Link_out 1 C [Cys] / R [Arg]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GTAATTCTTGGGAATAAGAATACCTTAAATAATATAATAAAGCTTATGTGTGAGAATTTAGTACCAAATGCCGTGTTAACAGTTATG
CGTGAGTATAGGC A/G TTTGGGAGATTCCATGAAAAAATTTGATAAAGTCAGTAGAAATTTCAGTAATGGCTCATAAGTCTAGCTAAT
GCTGAATATTGAATTGCCTTGAATTTGT-3'

[Top]

RS ID: 6129757 Link_out

Alleles: A/G

Validation:

  • By cluster

Details:

Chromosome Reference Position
20 39742706

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_003286 Link_out NP_003277 Link_out 1 E [Glu] / K [Lys]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AAgagaccatcctggccaatgtggtgaaaccccatctctactaaaaatacaaaaaaaaaaaaaaaaataaaaattggcgtggtggcg
ggcgcctgtagtcccagctacttcggaggctgaggcaggagaatggcatgaacccgggagacggagcttgcagtgagccaaaattgcgcc
attgcactctagcctggcgacagagcgagactgtctcaaaaaaaaaaaaaaaaaaaaCACAGAACGAAATTGTGTAAGGATCATGTCTCT
TCCATTCATGCTCATCTTTTCTTTCTTTCCTGGGCAGCTTGCTCTGAGAGCAGGCAATGAAAAGGAGGAAGGAGAAACAGCGGACACTGT
GGGCTGCTGCTCACTTCGTGTGGAGCACATCAATCTACACCCA A/G AGTTGGATGGTCAGGAATATGTGGTAGAGTTTGACTTCCTCG
GGAAGGACTCCATCAGATACTATAACAAGGTCCCTGTTGAGAAACGAGTAAGTTAATGTACCTGTACTGTCTGACTTGTTTTCCATTATT
CAACAAGCATGGGTTGACTGCTTTTTTGTGTGCTTTGCACTTTGCTGGGCACCAGCAAAAGTGACTTGAGACAGGCAACAtggcacatgc
ctgtagacccagctattcagaaggctgagacaggaggatcactggagaccaaaagtttgaggctgtagtgtgctgtgatcacacctgtga
atagccactgtactccagcctgggcaaaatagtgagaccttgcctctcatattaaaataaataaaaataaaTGACTTGAAAGAGGGGA-3
'

[Top]

RS ID: 6029545 Link_out

Alleles: A/G

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
20 39728767

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_003286 Link_out NP_003277 Link_out 3 R [Arg] / R [Arg]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TCCTGTTTTGATAGTACTCAGTAAAACAGTATGAATTTTTAAAGTACATTTAAAAACACCCAAATAACATTTACAAACATATATCCT
TTAAGACACAAGAATCAGTTTTGAATCTAGTTGAAATCAATCCTTATAGGCAGATCTTTTTGGGGAATTTTATGATATTTAAGTTTGAGA
AAACCACTAGAGGTTTTCCTTTATTTGAATTTATTTTTTAGTGATTTTTCAGACTTTCCTCTACCTTGACTTAGTCTCCCACAAGAGATA
AAATGCATTAGTAGAGAACAGCAATCTGAATCTATTTTGAGTACTTTCTTGCTGTCTTCCAGAAAATCAAAGAGGAGAATGAAAAATTAC
TGAAAGAATATGGATTCTGTATTATGGATAACCACAAAGAGAG A/G ATTGCTAACTTCAAGATAGAGCCTCCTGGACTTTTCCGTGGC
CGCGGCAACCACCCCAAGATGGGCATGCTGAAGAGACGAATCATGCCCGAGGATATAATCATCAACTGTAGCAAGTGAGCTCGCACTTCA
TCCTATGGGCCAAAAAGGGGGTGGAGGGCGTCCTTTATTGTACTTGGGAATATTTCCCAGGTTACACAGGACTGTTTGGGAAGGGAGATA
CTTAAGAGCAGGACAGTATTTCATGCGTAGGTCTCCAGATGTTTTTGAGGTAcagttgtctcccctcatccacaggggatatgttccaag
acccccagtggatgcctgcaacttcgacccaattgctgtcacttggaacacatttctgttgatgtcttccacccccaaatttaatgtc-3
'

[Top]

RS ID: 6029542 Link_out

Alleles: A/G

Validation:

  • By cluster

Details:

Chromosome Reference Position
20 39721137

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_003286 Link_out NP_003277 Link_out 1 G [Gly] / S [Ser]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GGCCTTTTCCTTACAAACAATGTAAACAATCCCTCTGTCATGTATGCCATTGTGGTAAAACAACTGTTTACATTTTCAAGTCCCTCA
CTTGTTACTGAGCTCCTTCATTGTTGATCTCTTCTGTCCAGTATTCTTAAACTGAGCTGTTGAAATGTATTTTCCTTTATTCACCACAGT
ATTTCATCTTACTTGTGAGCGTTGGCTTTTTCAAAATGAGAGACACTGGTTCTTTTGATCCAGGCCTTGAATGTGAGGCCCAGAAGTCAT
TCCAGAGCACTAATCAGTTGAGCGGATAATTATTTGGCATTTAATCAGTGATGATCCCCATGTTAGACAAGGCGATCACTAAATGAGGCT
GTGCTTTGTCTTTTAAAGGTGGGAAGAAGAGCGCTATCCTGAA A/G GCATCAAGTGGAAATTCCTAGAACATAAAGGTCCAGTATTTG
CCCCACCATATGAGCCTCTTCCAGAGAATGTCAAGTTTTATTATGATGGTGAGTTGTTTCAAGGTTCTTGATTCTTGGCCAGGAAAAGAA
ATCTGCTTCTATTTAGGGATAGAAAACAAGGAAGGATCCTATGTAATAGATAATCCTTTTTATTTCATTTTGTTTTATTGCCATGCAATT
TTGAGGAAGGGGCATCAGGTGTTAACTCTTAAAGGCTCATTTGCTGCTGAAAAAGTGCCATGGAAAAGGGGCTATTCATGTCTTCCCTAC
ATAGTCCAAAAAAGGTTTGTCAACATGGCTAACAGTGTGTGGTCCACAAGCTGAAGGTTTTGATCTGAACTTCATTTCTAGGGAGCAA-3
'

[Top]

RS ID: 1061982 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
20 39744983

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_003286 Link_out NP_003277 Link_out 3 T [Thr] / T [Thr]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AAGCATCTTCAGGATCTCATGGAGGGCTTGACAGCCAAGGTATTCCGTAC A/G TACAATGCCTCCATCACGCTACAGCAGCAGCT
AAAAGAACTGACAGCCCC-3'