SNPJam Report for SLC19A3

Showing coding SNPs for SLC19A3 (Gene ID: 80704)

Show all SNPs for this gene at dbSNP

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This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

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RS ID: 117864472 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
2 228560645

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_025243 Link_out NP_079519 Link_out 1 I [Ile] / V [Val]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TTAAATGAAAAGTTGGCTTAGTTGTGTCTAATTTAATATAAAGCAGTCAACATTTAATATTGCAATTGACTAAAATCCTTCTGAAGT
TCTTAGAGAAAGTTTAGAAAGACAGAAGAGAGAGGAATACAGTTCAGTTTTAGGAGTGGTTGGTAAAACTTACACTGCTATGGTTATAAG
AAGCATATAGCTGGACTTGAATA C/T CAAATAGCCAGCATAGCACGCCCAGATATTGGCTGTGTAATGCATGAGAAATAAAGAACCGG
CATTGACAACTGAGAAGACCACCAGAGCCAGCTCTCCCAGAAGGTCCCAGTTGACTTTCACATAACCCACTGCAAAGGCAGCCACAGCCC
CTGAAAAAAAACATTGAAGGCAATCAAACATAATGACTTTGCATGCAG-3'

[Top]

RS ID: 117013375 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
2 228563983

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_025243 Link_out NP_079519 Link_out 1 A [Ala] / T [Thr]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TACTGGATTCACGCTTGATGACTTCTTTATTTCTCTGCTGGGTTTTGCATGAAAAAACATGCTTTTCTTGGGCATTGGTAGGAAAAG
TGAGAAAAGGAAAGCCACGGAGACAGAGGCCAAGGATATGACGTTGAGGTAAAAGTACGACATGTTCGCCAGGGATACCAAGAGTTGAGC
CAGCACCGACCCTGCTGTGTAGG C/T GGCCAGCGTGACGCTCCTGCAGTAGCCGCTCACTCTCTGGTAGTGCTCGGGGCTGACCACGC
TGTATATGTAGGCGTAGTAGGCCACCTCGGCGGCGGTGACCATCCCATAGAAGAACTCTACAACCTGCATGGTCTTCACTCCTTGGCCAA
ACAACAGCAGCAGCCAGGTAATGATGAAACTGATACCTTGCAAGATGA-3'

[Top]

RS ID: 116533505 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
2 228563874

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_025243 Link_out NP_079519 Link_out 2 F [Phe] / S [Ser]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TCAGGCTGTTCAGCTGGCCCTTATTCAGCTTCCCTGAAGTGCTGAGTATTTCTGATGTGGGTTTCTGCTCTTCACAGCCTGGTGCTT
CACCTTCGTGAGTTTCCTCTAATACTGGATTCACGCTTGATGACTTCTTTATTTCTCTGCTGGGTTTTGCATGAAAAAACATGCTTTTCT
TGGGCATTGGTAGGAAAAGTGAG A/G AAAGGAAAGCCACGGAGACAGAGGCCAAGGATATGACGTTGAGGTAAAAGTACGACATGTTC
GCCAGGGATACCAAGAGTTGAGCCAGCACCGACCCTGCTGTGTAGGCGGCCAGCGTGACGCTCCTGCAGTAGCCGCTCACTCTCTGGTAG
TGCTCGGGGCTGACCACGCTGTATATGTAGGCGTAGTAGGCCACCTCG-3'

[Top]

RS ID: 113140685 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
2 228560713

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_025243 Link_out NP_079519 Link_out 2 V [Val] / A [Ala]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ACTAAAATCCTTCTGAAGTTCTTAGAGAAAGTTTAGAAAGACAGAAGAGAGAGGAATACAGTTCAGTTTTAGGAGTGGTTGGTAAAA
CTTACACTGCTATGGTTATAAGAAGCATATAGCTGGACTTGAATATCAAATAGCCAGCATAGCACGCCCAGATATTGGCTGTGTAATGCA
TGAGAAATAAAGAACCGGCATTG A/G CAACTGAGAAGACCACCAGAGCCAGCTCTCCCAGAAGGTCCCAGTTGACTTTCACATAACCC
ACTGCAAAGGCAGCCACAGCCCCTGAAAAAAAACATTGAAGGCAATCAAACATAATGACTTTGCATGCAGGAAAATATCAACACCCTCTC
TTAAAAACCCAGGTCTCGGGTAATTCTGAAAGATAAATATATTGCTTT-3'

[Top]

RS ID: 78613486 Link_out

Alleles: A/C

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
2 228563644

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_025243 Link_out NP_079519 Link_out 1 V [Val] / L [Leu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TTGCTTACCTCCAAAGGTTGCAATAGCTTCTACGGCCCCATTATAGATGGAAGAATCTTGGGATGGCGCCTTGTAATCCCACAGGAT
TTGAACATAGTTCAAAACCTGGTTAAAACCTGCTGTGGCGAAAGCCCACCATAGAGACCAGTAGAAAAGACGTTTTGAGGAGTAGCACTC
CTTCAAATCTTGGAACCACTGCA A/C AAAAACGTCCACAGTCACATTGCTTGGTTTCAGGCTGTTCAGCTGGCCCTTATTCAGCTTCC
CTGAAGTGCTGAGTATTTCTGATGTGGGTTTCTGCTCTTCACAGCCTGGTGCTTCACCTTCGTGAGTTTCCTCTAATACTGGATTCACGC
TTGATGACTTCTTTATTTCTCTGCTGGGTTTTGCATGAAAAAACATGC-3'

[Top]

RS ID: 76517176 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
2 228563996

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_025243 Link_out NP_079519 Link_out 3 S [Ser] / S [Ser]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CTTGATGACTTCTTTATTTCTCTGCTGGGTTTTGCATGAAAAAACATGCTTTTCTTGGGCATTGGTAGGAAAAGTGAGAAAAGGAAA
GCCACGGAGACAGAGGCCAAGGATATGACGTTGAGGTAAAAGTACGACATGTTCGCCAGGGATACCAAGAGTTGAGCCAGCACCGACCCT
GCTGTGTAGGCGGCCAGCGTGAC A/G CTCCTGCAGTAGCCGCTCACTCTCTGGTAGTGCTCGGGGCTGACCACGCTGTATATGTAGGC
GTAGTAGGCCACCTCGGCGGCGGTGACCATCCCATAGAAGAACTCTACAACCTGCATGGTCTTCACTCCTTGGCCAAACAACAGCAGCAG
CCAGGTAATGATGAAACTGATACCTTGCAAGATGATGACTGGCTTGTA-3'

[Top]

RS ID: 74693100 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
2 228563882

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_025243 Link_out NP_079519 Link_out 3 A [Ala] / A [Ala]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TTCAGCTGGCCCTTATTCAGCTTCCCTGAAGTGCTGAGTATTTCTGATGTGGGTTTCTGCTCTTCACAGCCTGGTGCTTCACCTTCG
TGAGTTTCCTCTAATACTGGATTCACGCTTGATGACTTCTTTATTTCTCTGCTGGGTTTTGCATGAAAAAACATGCTTTTCTTGGGCATT
GGTAGGAAAAGTGAGAAAAGGAA A/G GCCACGGAGACAGAGGCCAAGGATATGACGTTGAGGTAAAAGTACGACATGTTCGCCAGGGA
TACCAAGAGTTGAGCCAGCACCGACCCTGCTGTGTAGGCGGCCAGCGTGACGCTCCTGCAGTAGCCGCTCACTCTCTGGTAGTGCTCGGG
GCTGACCACGCTGTATATGTAGGCGTAGTAGGCCACCTCGGCGGCGGT-3'

[Top]

RS ID: 59736804 Link_out

Alleles: C/T

Validation:

  • By cluster

Details:

Chromosome Reference Position
2 228563911

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_025243 Link_out NP_079519 Link_out 1 V [Val] / I [Ile]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ACATTGCTTGGTTTCAGGCTGTTCAGCTGGCCCTTATTCAGCTTCCCTGAAGTGCTGAGTATTTCTGATGTGGGTTTCTGCTCTTCA
CAGCCTGGTGCTTCACCTTCGTGAGTTTCCTCTAATACTGGATTCACGCTTGATGACTTCTTTATTTCTCTGCTGGGTTTTGCATGAAAA
AACATGCTTTTCTTGGGCATTGGTAGGAAAAGTGAGAAAAGGAAAGCCACGGAGACAGAGGCCAAGGATATGA C/T GTTGAGGTAAAA
GTACGACATGTTCGCCAGGGATACCAAGAGTTGAGCCAGCACCGACCCTGCTGTGTAGGCGGCCAGCGTGACGCTCCTGCAGTAGCCGCT
CACTCTCTGGTAGTGCTCGGGGCTGACCACGCTGTATATGTAGGCGTAGTAGGCCACCTCGGCGGCGGTGACCATCCCATAGAAGAACTC
TACAACCTGCATGGTCTTCACTCCTTGGCCAAACAACAGCAGCAGCCAGGTAATGATG-3'

[Top]

RS ID: 34507036 Link_out

Alleles: A/G

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
2 228560728

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_025243 Link_out NP_079519 Link_out 2 V [Val] / A [Ala]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ATTCAGAGAGCAAATAGTTAAATGAAAAGTTGGCTTAGTTGTGTCTAATTTAATATAAAGCAGTCAACATTTAATATTGCAATTGAC
TAAAATCCTTCTGAAGTTCTTAGAGAAAGTTTAGAAAGACAGAAGAGAGAGGAATACAGTTCAGTTTTAGGAGTGGTTGGTAAAACTTAC
ACTGCTATGGTTATAAGAAGCATATAGCTGGACTTGAATATCAAATAGCCAGCATAGCACGCCCAGATATTGGCTGTGTAATGCATGAGA
AATAAAGAACCGGCATTGACAACTGAGAAGACC A/G CCAGAGCCAGCTCTCCCAGAAGGTCCCAGTTGACTTTCACATAACCCACTGC
AAAGGCAGCCACAGCCCCTGAAAAAAACATTGAAGGCAATCAAACATAATGACTTTGCATGCAGGAAAATATCAACACCCTCTCTTAAAA
ACCCAGGTCTCGGGTAATTCTGAAAGATAAATATATTGCTTTCACAAAATTGTGTGATCGACCTGAATGTGGATCTATCCTTTTCTCAAG
CGTGTCTTCTTTTGGCTTTTCTTTTCACTTGCTATTCTTTCGGTCACTTAGTCACCATACTTTTAATT-3'

[Top]

RS ID: 34080459 Link_out

Alleles: A/G

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
2 228566993

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_025243 Link_out NP_079519 Link_out 3 Y [Tyr] / Y [Tyr]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TTGGCTGCAATTTTTTGCAAGTAAGAAGAGGAAATAGTTTGAAAAGTTCTATATGGGACACATATTATGAAAATCAGGCTCACTGAG
TTTAATGTGTTCATCTTATATCAAGTTGAGGGAAGCCCTGTATCCTTGTTCAAGTCCCATAAAATTTAAAAAACCACATTAAGATATGTA
TGTATGTTAACTTACCTCTGCACTGGTCAGGTTTTTATCTGGTCCAGATAAATATGGGATAAGGAATGGTTCTGAGGGTCTCATCATGGA
GAAAAAACCAAATAAGCAGAGGATCACAGTGGG A/G TAAATCCAGGAACTGCTTAGTGAAGTTCTGTAACAATCCATGGCTGATCAAA
TGGAAACAAAGAGAAAATTAAGTGATGCTTATTCTTTTTAGCATCCTTGATGCGATGAAAACCTGATTTTTTTTTTTTTTTTGAGATGGA
GGGTCGCTCTGTTGTCCAGGCTGAAGTGCAGTGGCATGATCTCAGCCCATTGCAACCTGTGCCTCCCGGGCTCAAGCCATTCTCCTGCCT
CAGCCTCCCAAGTAGCTGGGATTACAGGTGCCTGCCACCATGACTGGATAATTTTGTATTTTTAGTAG-3'

[Top]

RS ID: 17853011 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
2 228566936

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_025243 Link_out NP_079519 Link_out 3 P [Pro] / P [Pro]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CCATAAAATTTAAAAAACCACATTAAGATATGTATGTATGTTAACTTACCTCTGCACTGGTCAGGTTTTTATCTGGTCCAGATAAAT
ATGGGATAAGGAA C/T GGTTCTGAGGGTCTCATCATGGAGAAAAAACCAAATAAGCAGAGGATCACAGTGGGGTAAATCCAGGAACTG
CTTAGTGAAGTTCTGTAACAATCCATGG-3'

[Top]

RS ID: 12185721 Link_out

Alleles: C/T

Validation:

  • By cluster

Details:

Chromosome Reference Position
2 228563675

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_025243 Link_out NP_079519 Link_out 3 L [Leu] / L [Leu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ACGGCCCCATTATAGATGGAAGAATCTTGGGATGGCGCCTTGTAATCCCACAGGATTTGAACATAGTTCAAAACCTGGTTAAAACCT
GCTGTGGCGAAAGCCCACCATAGAGACCAGTAGAAAAGACGTTTTGAGGAGTAGCACTCCTTCAAATCTTGGAACCACTGCACAAAAACG
TCCACAGTCACATTGCTTGGTTT C/T AGGCTGTTCAGCTGGCCCTTATTCAGCTTCCCTGAAGTGCTGAGTATTTCTGATGTGGGTTT
CTGCTCTTCACAGCCTGGTGCTTCACCTTCGTGAGTTTCCTCTAATACTGGATTCACGCTTGATGACTTCTTTATTTCTCTGCTGGGTTT
TGCATGAAAAAACATGCTTTTCTTGGGCATTGGTAGGAAAAGTGAGAA-3'