SNPJam Report for SEC14L2

Showing coding SNPs for SEC14L2 (Gene ID: 23541)

Show all SNPs for this gene at dbSNP

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This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

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RS ID: 79289872 Link_out

Alleles: G/T

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
22 30812260

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_033382 Link_out NP_203740 Link_out 1 G [Gly] / W [Trp]
missense NM_012429 Link_out NP_036561 Link_out 1 G [Gly] / W [Trp]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CCTGGCTGTGTCCTCAGGTAGGGGCCTGGGCCCTTCCAGGAGACCCGAGCTTTCATCTATAGGTCCTGATAGGTGGGCTGGAATAGG
AGAAGCCCTGGTGCCAGGACCCCGGAGAGGGCACACACAGACAGAATTATGTCTCAATTGGTGATATCCCCTGCAGGTGGCAGTTTATGT
CAGATGGAGCGGATGTTGGTTTT G/T GGATTTTCCTGAAGACCAAGATGGGAGAGAGGCAGCGGGCAGGGGAGATGACAGAGGTGCTG
CCCAACCAGAGGTACAACTCCCACCTGGTCCCTGAAGATGGGACCCTCACCTGCAGTGATCCTGGCATCTGTAAGTATCTCTGCCTTGGC
AATGCCTTGAAGCCCCATGTCCAGCTTTCTGCCTGTGAGGTTCCTCTT-3'

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RS ID: 77995868 Link_out

Alleles: A/G

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
22 30803579

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_033382 Link_out NP_203740 Link_out 2 H [His] / R [Arg]
missense NM_012429 Link_out NP_036561 Link_out 2 H [His] / R [Arg]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GTGGCTCCTCTGTGTCTTTGCCCAGGTGATCCAACAGTATCTGTCAGGGGGTATGTGTGGCTATGACCTGGATGGCTGCCCAGTCTG
GTACGACATAATTGGACCTCTGGATGCCAAGGGTCTGCTGTTCTCAGCCTCCAAACAGGACCTGCTGAGGACCAAGATGCGGGAGTGTGA
GCTGCTTCTGCAAGAGTGTGCCC A/G CCAGACCACAAAGGTGAGTGGACCACCATGGCTAGAAATGAGTTGACCACAGCAGAGGCATT
CCAGCAGAAGCAGGGATGTCACACAGGAATATAAGCACAGCTTCAGGGCCAAGGCCCAGCCTTTTTTTTTTTTTTTTTAATTTTTAAAAC
TTTTTTAGTAGAGACGGGGTTTCATCATGTTGGCCAGGCTGGTCTTGA-3'

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RS ID: 35984615 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
22 30806589

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_033382 Link_out NP_203740 Link_out 3 P [Pro] / P [Pro]
coding-synonymous NM_012429 Link_out NP_036561 Link_out 3 P [Pro] / P [Pro]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CGCAGACTACTTTACAACTCACAGAGCTTTCAGTATTTATAATCTCCTTTGAGCCACCCAGCCTGATGAGATGGGAAGAGACCATTT
GATTATATCCACTGTAAAGATGGGAAGGCTGGACCTCAAAGATGCCCATGCTGAGCTGCACACCCTGGGCTGCCTATGTGGGCTCCAGAG
CCCTGGGGAACATGTGGCCCAGCATGGGCTGGCAGGAGGGTAGCAGGTGCTGCAGAGGACGCTGTTAGGGACAGACTGGGCACTGCTCCC
AGCCTCACATTATCTGGTCTCTGTTCCAGCCCC C/T AAACTGTTTCCTGTGGCCTATAACCTCATCAAACCCTTCCTGAGTGAGGACA
CTCGTAAGAAGATCATGGTCCTGGGAGGTAAGTGGTCCAGACTGTTCTCAACTCCAAAGGAGGGTCTGTAGCCTAAATCGGGTCCAGCTT
TAGGGGTGTGGCCGTAGCCACCAGGGTGAAAGCTCCCTCTGCTAGTTTGGGAGCAGTGGGACCCAGGAGCAAGCTGGGGTGGAGCTAGTG
CCTTCTTCTGTTTTCCTAAGAACTCTTTCTCTCAGACACTCTAGAAGCAAGCACTGGGTCCATTATTG-3'

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RS ID: 34425833 Link_out

Alleles: -/T

Validation:

Not Completed

Details:

Chromosome Reference Position
22 30812229

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
frameshift NM_033382 Link_out NP_203740 Link_out 3 Q [Gln] / H [His]
frameshift NM_012429 Link_out NP_036561 Link_out 3 Q [Gln] / H [His]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CTTCTAGATCAACTACGGGGGTGACATCCCCAGGAAGTATTATGTGCGAGACCAGGTGAAACAGCAGTATGAACACAGCGTGCAGAT
TTCCCGTGGCTCCTCCCACCAAGTGGAGTATGAGATCCTCTTCCCTGGCTGTGTCCTCAGGTAGGGGCCTGGGCCCTTCCAGGAGACCCG
AGCTTTCATCTATAGGTCCTGATAGGTGGGCTGGAATAGGAGAAGCCCTGGTGCCAGGACCCCGGAGAGGGCACACACAGACAGAATTAT
GTCTCAATTGGTGATATCCCCTGCAGGTGGCAG -/T TTTATGTCAGATGGAGCGGATGTTGGTTTTGGGATTTTCCTGAAGACCAAGA
TGGGAGAGAGGCAGCGGGCAGGGGAGATGACAGAGGTGCTGCCCAACCAGAGGTACAACTCCCACCTGGTCCCTGAAGATGGGACCCTCA
CCTGCAGTGATCCTGGCATCTGTAAGTATCTCTGCCTTGGCAATGCCTTGAAGCCCCATGTCCAGCTTTCTGCCTGTGAGGTTCCTCTTC
CTCCATGGATTTTTGGCTCTGAGTGTTAGAACTAGAAGTGGAATGCCATCAGTTCAATCCTCTCCTTG-3'

[Top]

RS ID: 34330978 Link_out

Alleles: A/G

Validation:

  • By frequency

Details:

Chromosome Reference Position
22 30795670

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_033382 Link_out NP_203740 Link_out 3 P [Pro] / P [Pro]
coding-synonymous NM_012429 Link_out NP_036561 Link_out 3 P [Pro] / P [Pro]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CACCCCGATGCCTCTCCCTACAGTTTCGGGAGAATGTCCAGGATGTGCTGCCGGCCCTGCC A/G AATCCAGATGACTATTTTCTC
CTGCGTTGGCTCCGAGGTGAGGGAAGAGGGGCTGCGGGAGGCTGGGGCAGGGGCTTGTTCTGGGCAACAGAATAGCACCCTCTGAAAACC
CTGCCCTTGGCAATTGAGGCATCTAGAGTGTCCAACCTTTAGCGCCAAAGGGCCCTTGGCAATGACATAAGCTCAACCCTCCTAGTGGAT
AAAGACAYTGAGGCTCARAGAGGTCAAGTGACTTGTTCCAAGCCACACAGTGAGCGAACTGCAGGCAGAGAAAAGGGGAGAGTCCAGGTC
GGCTGACCCTTGGCCCACAGCCTTTTCCATCTACTCAAGAAATCTGCTCTGCTGATGGAGTTGGGGAAAYTGGCTGAAGAAAAAGTGAGA
AAGGCCCCAGCCATGTKGGGGGTCGGAGGCAGAGCCAAGTGTAGA-3'

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RS ID: 34215778 Link_out

Alleles: -/A

Validation:

Not Completed

Details:

Chromosome Reference Position
22 30803097

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
frameshift NM_033382 Link_out NP_203740 Link_out 2 R [Arg] / Q [Gln]
frameshift NM_012429 Link_out NP_036561 Link_out 2 R [Arg] / Q [Gln]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GTGGCGCGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTTCATGCCTCAGCCACCTGAGTAGCTGGGATTACAGG
TATGCACCACCACAGCTGGCTAATTTTTCTATTTTTAGTAGGGACGGGATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGGCCTC
AAGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAACCACCATGCCTGGCTGTCCATCCCTCCTTTTAAAAATTT
CCCCATTGTATCTTTGTAGCATGTGGAGTTCCG -/A AAAGCAAAAGGACATTGACAACATCATTAGCTGGCAGCCTCCAGAGGTGAGC
ACAAATTATCCCACCTCATCCCTATGCTAGGCCTTTCAGACCCACAACCTGGGTCCTGGATCCACTGGATTTGGATCCTTAGAGGAAAGG
TCTGACAATGCCCACTGAGCCCTGATGGTCTCCAGAATGGGCATCTGTTGGTACCCAGGAGAGGGAGGTAGAGAAAGATACTGATGAACC
TGGAGTAAGGCCCTGTGGTCCAGGCAAGGTATGGATGCCTGCTGACCAGGTGGCTCCTCTGTGTCTTT-3'

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RS ID: 9608908 Link_out

Alleles: A/G

Validation:

  • By hap map

Details:

Chromosome Reference Position
22 30818312

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_012429 Link_out NP_036561 Link_out 3 K [Lys] / K [Lys]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CAAGCCCTTTGCCAGAACTGCCTGAATGTCTGTCTGGTTTCTGCCTTCCCTCAGATGTCCTGCGGTTTGACAACACCTACAGCTTCA
TTCATGCCAAGAA A/G GTCAATTTCACTGTGGAGGTCCTGCTTCCAGACAAAGCCTCAGAAGAGAAGATGAAACAGCTGGGGGCAGGC
ACCCCGAAATAACACCTTCTCCTATAGC-3'

[Top]

RS ID: 757660 Link_out

Alleles: A/G

Validation:

  • By cluster
  • By frequency
  • By 2 hit 2 allele
  • By hap map

Details:

Chromosome Reference Position
22 30793137

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_033382 Link_out NP_203740 Link_out 2 R [Arg] / K [Lys]
missense NM_012429 Link_out NP_036561 Link_out 2 R [Arg] / K [Lys]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GCTGTGCTGTCCTGCACTATGCGAGCCTGGTTAGAAGAGCTCATTAGATAGCACCTTTCAATCCCTCCTTGTTCAgaggcccagaga
gctcaggtgtctcttccaaggtcacacaatgaggtaaggataaatttggaactaaaactgagacTCCCTGCCCTTCTGATGCCCACTGGC
CTCAGTCCCAGTGGGCACACTTGCTCGCCTCCTGCCTGGGTCTCTGACTTCAGGAGGGCGGAGGGGGCCCGTGTCAGAGCCTTCCGCGCC
CCAGCGCATCGCTCCCTACTCCGCCTCTCGGGATCCTTTAAGAGGCGGGGCTTGGCTGCCAGCTCCGCGGCCCGGGCAAAAGGCTGGGAC
TTTACTCCGGGTGGCGGCGAGGACGAGTCTGTGCTCCATCAGCTGCCGCACCCGCCGCCTCCCGCCCCCAAACCCCATCCCCGCGGTTGA
GCCACGATGAGCGGCAGAGTCGGCGATCTGAGCCCCA A/G GCAGAAGGAGGCATTGGCCAAGGTGAGCTGTAGCCCTGGCCCGGGCTC
CCGCCTCGGGCTGTGGCCCTCGCCCTCCTGCGGCAGCGAGAAGGGACGGGGCTGGGTGGGGGCCGAGGGTCCGTGGCGGGCGGCGGAGGG
AACAGAGGCGGCTGTCCCAGCCTGGCCCGCGCCCGCGGATGGCTCCTTCCTCCCTTTGCCACCCTCGAGGTCCCAGGAAGTTTGGCCACC
CCCCGCCCAAGCTCTGAGCAGCCGTGGCGGTGCCACCTGGGGACAAGTGGTTGCTTGTGAGTCCCCGGAGGCCGCTGAGGGCACAAAGGC
AACATTCATCCTCGGGACTGGCAGCCGGGCCCTGGGGCAGGGGCAGGGGCAGGGGCCCAAGTTTCCTCCCATTTCCGGGAGGCTTTCTTC
TTGTAGGGTCAGTGGCACGATGGAAAGGGCTCTGGATAGCTCCTTGG-3'