SNPJam Report for RBP1

Showing coding SNPs for RBP1 (Gene ID: 5947)

Show all SNPs for this gene at dbSNP

This SNP viewer is in beta and your feedback is appreciated!

This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

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RS ID: 71676961 Link_out

Alleles: (LARGEDELETION)/-

Validation:

Not Completed

Details:

Chromosome Reference Position
3 139236524

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
frameshift NM_002899 Link_out NP_002890 Link_out 3 Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CCAAGCCTGTGCCTCTGGAGAGAAACACGGTGCAATTTCAGGACATGTGGCTGAATTTATCCACTCTGCCCATGGGTGGCACTAGGA
GAAGCTGGCCTCAGAAGCCCTGGAGAAAAAGTGAGCACAGTGGGCAGTGAAACTTCCCCCAAACAGACGTTTTGAACACAGATCACTTTA
TTGGCATGGCTTTGTTTTAAGAAAAGGAAAAGTGACAAAGCCAAGAGACAGACTCTGCTAACAGATGCCTGGGGGTGGCTGGACATTTTT
GCCTCATGCTGTGCAAAGAGGGGGATCCTGGCCCACACATCCTGCTGATTCCTTGGGACAAGGTTGTCTGCCTGGGCCTCACTGCACCTT
CTTGAATACTTGCTTGCAGACCACACCTTCCACTCTCATCTCC (LARGEDELETION)/- AGGTGCAGCTCATCACCCTCGATCCACT
GGGTCCAGCCACGCCCCTCCTTCTCACCCTTCTGCACACACTGGAGCTTGTCTCCGTCCCAGCTCACTGTTGTCTGCCAAGAAAGAGACA
CATTTGTCAATCCTGAGCAAGCGGGGAGCTCCTGGAGGCTGGGGGAGGGGGCAGCTCCCAAACTTGATAATCTGGGATGTGCTCACGTCA
ATTTCATTGTAGAAAATCTGCAGCCTAATACTCCCTGTCCATCACATGCTTTTATTAAAGTGTGTAAATCAGTTTTAAAATTTATGAAAA
CCTTCATAAATTTTATTTAAAAGGGTAATTAGGAGGGAAAAAGTCATTGGAGTGGGGCTGTCATTGCAAGCACTGAGAATGGGGCTAAGG
TGGAGAGGAGG-3'

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RS ID: 34674353 Link_out

Alleles: A/G

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
3 139257727

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_001130992 Link_out NP_001124464 Link_out 1 M [Met] / V [Val]
missense NM_001130993 Link_out NP_001124465 Link_out 1 M [Met] / V [Val]
missense XM_002342372 Link_out XP_002342413 Link_out 2 I [Ile] / T [Thr]
missense NM_002899 Link_out NP_002890 Link_out 1 M [Met] / V [Val]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TACTTTTTGTTTTTAAACGGTTAACATAAGAGCAGAAAACTTTGTTGGGGGCGGCAGGGGAGGCACAGGCAGGCTGTGCGCAGAGAC
AACGCAAAGCCAGCGGGAACCCTAACAGTGTTCGCGGGCGGAGAGGGCTCCTGGGGCCCCGCTACCTTGGGAACGGTTCTCTGAGTTTCC
CTGCCAACTCTCTGGCGCTCTCTCTCTCCCCGTTCAACCCCCACCGCAGACGTCAATGTGGCCTTGCGCAAAATCGCCAACTTGCTGAAG
CCAGACAAAGAGATCGTGCAGGACGGTGACCAT A/G TGATCATCCGCACGCTGAGCACTTTTAGGAACTACATCATGGACTTCCAGGT
TGGGAAGGAGTTTGAGGAGGATCTGACAGGCATAGATGACCGCAAGTGCATGGTGAGGATTCGCGTCCACCTGGTGTCTCCTGCCCAGGG
GGCCTGACCAAGGGCTGGGCTAGTTCATCCGAGAGGGGCAAGGGCCTGAGGGACTGAAAACTCTTCCCACTCTCAGCCCCCATGGTGGGC
AGCACCAACTCATGAAGCATCCTGCTCTATCTACACTGGAAGGTGATGGTTATGAAGGCTGCCATGTG-3'

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RS ID: 11549984 Link_out

Alleles: A/G

Validation:

  • By cluster

Details:

Chromosome Reference Position
3 139258411

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_001130992 Link_out NP_001124464 Link_out 3 R [Arg] / R [Arg]
coding-synonymous NM_001130993 Link_out NP_001124465 Link_out 3 R [Arg] / R [Arg]
coding-synonymous NM_002899 Link_out NP_002890 Link_out 3 R [Arg] / R [Arg]
utr-3 XM_002342372 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GAGGCAGGCAGGCAGCGTCTCGGGAGGGCTCTAGGGAGCGGCCCGGAGCTGCTCGGCGGGGCGCCCAGGGCGCAGCGGGCAGCGCTT
ACCGAGGGCGCGCAGGTACTCCTCGAAATTCTCGTTGACCAACATCTTCCAGTACCCAGTGAAGTCGACTGGCATTTCGGGGAGTGACTG
GAGCCAGTTGGCCACAAGCGG A/G CGGGACGGCTGGAGACTGCCGGGACAGCGGCTGCCGGTGCTACGCGGGTGGTGGGCGGCCCGGA
AATGAGCGCCCTCCGGGGACAGGGGGCTCTGCGGGGCGGCGACAGCTGGATTCCCAGCGCGCACAAAGCCTGCGGGAGGATCCATTGTAG
CGGTCGCTCCTCCCCGCTTAGCGAGGGCGGGCGCAGGGGCGGGGGATGTCGAAGGGTCAGGTTTGTCCAGGCCGCGCCACCTTCGTTTCA
GACGTTCAGTTCGTTTCCCCTACAAAGGAAGAGGAGACCGGAGACGGGACGTTTGCTTTGTTGGCCGAACTCTTCGGCTGCTGGGGATTT
CCTTCAAACGCCATTAACTTCTCACACTCAGCAGCCACTCGGGAGTTGGGAAACAATCTCCTGGGGTTTGTGCTGGCGTGATTAAGGAAA
GAGGCCACTTACAGGCCTTTGTCTAAAGCCTCGCGCCGGTGGTGGCTGGGGTCAGGAAAGCTGGGAGGTTCAACTACGGGCGAGAAAATT
GGG-3'

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RS ID: 11549983 Link_out

Alleles: G/T

Validation:

Not Completed

Details:

Chromosome Reference Position
3 139257719

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_001130992 Link_out NP_001124464 Link_out 3 I [Ile] / I [Ile]
coding-synonymous NM_001130993 Link_out NP_001124465 Link_out 3 I [Ile] / I [Ile]
coding-synonymous NM_002899 Link_out NP_002890 Link_out 3 I [Ile] / I [Ile]
utr-5 XM_002342372 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TTCCCAACCTGGAAGTCCATGATGTAGTTCCTAAAAGTGCTCAGCGTGCG G/T ATGATCATATGGTCACCGTCCTGCACGATCTC
TTTGTCTGGCTTCAGCAA-3'

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RS ID: 2071386 Link_out

Alleles: C/T

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
3 139258508

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_001130992 Link_out NP_001124464 Link_out 2 P [Pro] / L [Leu]
missense NM_001130993 Link_out NP_001124465 Link_out 2 P [Pro] / L [Leu]
missense NM_002899 Link_out NP_002890 Link_out 2 P [Pro] / L [Leu]
utr-3 XM_002342372 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AACGTCCCGTCTCCGGTCTCCTCTTCCTTTGTAGGGGAAACGAACTGAACGTCTGAAACGAAGGTGGCGCGGCCTGGACAAACCTGA
CCCTTCGACATCCCCCGCCCCTGCGCCCGCCCTCGCTAAGCGGGGAGGAGCGACCGCTACAATGGATCCTCCCGCAGGCTTTGTGCGCGC
TGGGAATCCAGCTGTCGCCGCCC C/T GCAGAGCCCCCTGTCCCCGGAGGGCGCTCATTTCCGGGCCGCCCACCACCCGCGTAGCACCG
GCAGCCGCTGTCCCGGCAGTCTCCAGCCGTCCCGCCCGCTTGTGGCCAACTGGCTCCAGTCACTCCCCGAAATGCCAGTCGACTTCACTG
GGTACTGGAAGATGTTGGTCAACGAGAATTTCGAGGAGTACCTGCGCG-3'