SNPJam Report for PREP

Showing coding SNPs for PREP (Gene ID: 5550)

Show all SNPs for this gene at dbSNP

This SNP viewer is in beta and your feedback is appreciated!

This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

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RS ID: 34687658 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
6 105726148

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_002726 Link_out NP_002717 Link_out 3 N [Asn] / N [Asn]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GCATAGGCACAGTCCATGGTGGTCACTCACGTACTAGTTAACTGCAGTCCTCACTGCTAATTAACTACCTAGGTCCCTGTGCCATAA
AACTCTACTGTTGCTCTCCAGCCTCACAAAGGTGTTTTTGCCTTCCAGATACTCTCCATTGCATAATGTGAAGTTACCAGAAGCAGATGA
CATCCAGTACCCGTCCATGCTGCTCCTCACTGCTGACCATGATGACCGCGTGGTCCCGCTTCACTCCCTGAAGTTCATTGCCACCCTTCA
GTACATCGTGGGCCGCAGCAGGAAGCAAAGCAA C/T CCCCTGCTTATCCACGTGGACACCAAGGCGGGCCACGGGGCGGGGAAGCCCA
CAGCCAAAGTGATAGAGGAAGTCTCAGACATGTTTGCGTTCATCGCGCGGTGCCTGAACGTCGACTGGATTCCATAAACAGTTTTCGTGC
TTCCTCCTGACAGCGACAGAAAACCTCAAGGGCTTTCCCACGTTGACACCAAGAAACCACTGGGCATAATGCTTCCCCACGGGAACATTA
TTCCTGCACTCACAGGCTACAGTTGAACAGAACTGCCGTGGGAATTTTATCTTTTTTAGGCTTCTCCT-3'

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RS ID: 12192054 Link_out

Alleles: A/C

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
6 105776866

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_002726 Link_out NP_002717 Link_out 1 L [Leu] / V [Val]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ATTTTTAAAGTGAACAGCAACAGTGAAAAAACACTTACCTGGAGATAAAAAGGAAGTAAACTGATAGAAGATTTCAGTGTCCTTCTT
CTGACCGCTGTACCCTACAATGCTGCCGACATCGAGCGGGAAGGTCTTAAGGAGAGCACCAGTAGTCAGGTCATGGAGCTGCAGAATGTT
CTTGACGTCATGGAGGTAGCATA A/C GACCAAGAAGTTGGACCTGACACAAGCTATCCATTCTGAAAGGATAAGAAGAGAAAAAACCT
AATGCAATTTAAAAAATTAATGAAAACACATTTAATTGAGCAACAGTTCCAGAGCTACACATAGGGCTATGCAGCAATGAGACTTGCAAA
GTCACTTTTACAtttttttttttttttgagacagggtcttgctgtgtcgcccaggcttgagtacagtagtgcaatctcagctcactgcaa
cctctacctcccaggttcaagggattttcctgcctcagcctcccaagtggctgggattacaggtgtgtgccaccatgcctggctaatttt
tatatttttagtacagacggggtttcactatgtaggccaaactggtcttgaactcctggcctcaagagatctgcccacctcggcctccca
aaactgttaagattacaggcgtgagccaccacgcccagccTTATAATTGGTTTTAATCATTTATCTAGTTCTCAA-3'

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RS ID: 9500085 Link_out

Alleles: A/C

Validation:

Not Completed

Details:

Chromosome Reference Position
6 105800848

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_002726 Link_out NP_002717 Link_out 3 A [Ala] / A [Ala]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GGAATAGTACTAAAAGAAAAAAAATCAGATGAACTGACATGATGTGGTAGAATGGAAGAGGGTCTTGGGAAATCAATTAATAGACCA
CAATAATACTTTTTAAATGAAGTTTCTTGGAATAACTATCTGTGTCTGAAAAAATAACTCACC A/C GCGATGCCACTGGATTCCTGCT
GTAGGTCACAGTACCAGAGTCGGTTTACTGGATCACATCCTTCCCTTATTGATAACAAGACATAGCGGCCATCATCAGATAACTAAAAAA
GAAAAAAAAATAGTGCAGGGGACTAATTAGAATTTATT-3'

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RS ID: 9486069 Link_out

Alleles: A/G

Validation:

  • By cluster
  • By frequency
  • By 2 hit 2 allele
  • By hap map

Details:

Chromosome Reference Position
6 105821449

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
nonsense NM_002726 Link_out NP_002717 Link_out 3 Y [Tyr] / X

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ACAAATGTTTATTATTCTAAGCTACTACATTTTGGTGGGGTCTATTACACAGCAAAGCCAACTGATACAACATCCTTTGAGGAAACA
TGGTTCTGGACCACACAACCTCTATGTAGGGTTCAGCATCTCTTTTCAGTCACTTGAAGTCACACTTCATTTTGTGAAAAATGTGCTTCA
TCTGAAGTCTTCACTCACCATCACTTTTTCCATCCTGTTGAGGGTATGAGTTGTAGAACATTCCCTTCCCATCATGGGTCCAGGCCATAC
AGCTGAACTTGACTCTTTCAAGCACATCTGGAAGCTCTTTGGCACCATCAACTTTCATGAACTTGATTGTCACCCAGTCTGAGCCACTGG
CACTCAGACCATAGGCAAAATATTCACCATCTTCGCTGAACGC A/G TAACCTATGGGACACAGGAGAAATCATCCAGTGACAAACACG
GAACACAACTCCACGGTCCTTTATGCCATCTAACAAAGCTCTCTTTCATAACACGGAGGTAGAATGTGGCAATAAAAGGAATAGGAATCT
GGTAGTGAGGAATCCCGGGGGCTCAGCCCAAGTTTTACAGGAATTACCCTTATAACCTTAGACAAGCTTCCTAACCTCTCCAGGTCTTAA
TTTGTCTATAAAATGAAATATTAGATTATATGCCTACTAAAATGCTTTCATTTTGAAATTTTTATAATGCAATAGGCAGTTCAGTTAAAA
GCAGAGCTCATCTGGGACTTCTGTCATATTTCATTTATACTCTAAAGGGAATAAGGAGAAAAAGGAAACTGCTTTTAGAGTAATGACT-3
'

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RS ID: 6902415 Link_out

Alleles: A/G

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
6 105776792

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_002726 Link_out NP_002717 Link_out 3 F [Phe] / F [Phe]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TTCTGGGCATCTGTTCTACCGTTTTATTCCCATTAAGTAATTTTGGCTATAATACAGCATATGTGATTTTCAATAACATAGCATTAT
ACTTCCATTTCCCCAAAGAAACCCAAACACCAGTCGGATTTTTAAAGTGAACAGCAACAGTGAAAAAACACTTACCTGGAGATAAAAAGG
AAGTAAACTGATAGAAGATTTCAGTGTCCTTCTTCTGACCGCTGTACCCTACAATGCTGCCGACATCGAGCGG A/G AAGGTCTTAAGG
AGAGCACCAGTAGTCAGGTCATGGAGCTGCAGAATGTTCTTGACGTCATGGAGGTAGCATAAGACCAAGAAGTTGGACCTGACACAAGCT
ATCCATTCTGAAAGGATAAGAAGAGAAAAAACCTAATGCAATTTAAAAAATTAATGAAAACACATTTAATTGAGCAACAGTTCCAGAGCT
ACACATAGGGCTATGCAGCAATGAGACTTGCAAAGTCACTTTTACATTTTTTTTTTTT-3'

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RS ID: 1051484 Link_out

Alleles: C/T

Validation:

  • By frequency
  • By 2 hit 2 allele
  • By cluster

Details:

Chromosome Reference Position
6 105726036

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_002726 Link_out NP_002717 Link_out 1 V [Val] / I [Ile]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TCCATGAGAACAGTTCTCACATTTATTTAAAGATATAGAGGTTATGGATATAGATAAGTATGCCCGACTATGATCCTTAATTCAGCA
ATCTAATATTCACAATGTGTTTGTTGCCATTTAGCTATTTATCCCAACATGCCCTTAAAAAAAACACCAAAAAACCACATGTGCCTAGAC
AGGGTGGAAAAAGAAACACCAAGGCCTTGCTAAAAAGGAGAAGCCTAAAAAAGATAAAATTCCCACGGCAGTTCTGTTCAACTGTAGCCT
GTGAGTGCAGGAATAATGTTCCCGTGGGGAAGCATTATGCCCAGTGGTTTCTTGGTGTCAACGTGGGAAAGCCCTTGAGGTTTTCTGTCG
CTGTCAGGAGGAAGCACGAAAACTGTTTATGGAATCCAGTCGA C/T GTTCAGGCACCGCGCGATGAACGCAAACATGTCTGAGACTTC
CTCTATCACTTTGGCTGTGGGCTTCCCCGCCCCGTGGCCCGCCTTGGTGTCCACGTGGATAAGCAGGGGGTTGCTTTGCTTCCTGCTGCG
GCCCACGATGTACTGAAGGGTGGCAATGAACTTCAGGGAGTGAAGCGGGACCACGCGGTCATCATGGTCAGCAGTGAGGAGCAGCATGGA
CGGGTACTGGATGTCATCTGCTTCTGGTAACTTCACATTATGCAATGGAGAGTATCTGGAAGGCAAAAACACCTTTGTGAGGCTGGAGAG
CAACAGTAGAGTTTTATGGCACAGGGACCTAGGTAGTTAATTAGCAGTGAGGACTGCAGTTAACTAGTACGTGAGTGACCACCATGGA-3
'