SNPJam Report for MS4A2

Showing coding SNPs for MS4A2 (Gene ID: 2206)

Show all SNPs for this gene at dbSNP

This SNP viewer is in beta and your feedback is appreciated!

This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

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RS ID: 113607645 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
11 59861065

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
intron NM_000139 Link_out Not Applicable Not Applicable Not Applicable
missense NM_001142303 Link_out NP_001135775 Link_out 1 F [Phe] / L [Leu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ATTATCAGGTGAGAGGAAGCCTGGGAGCAAACACTGCCAGCAGCATAGCTGGGGGAACGGGAATTACCATCCTGATCATCAACCTGA
AGAAGAGCTTGGCCTATATCCACATCCACAGTTGCCAGAAATTTTTTGAGACCAAGTGCTTTATGGCTTCCTTTTCCACTGTATGTATTT
TTTTTTGTGTGGGAAGACTAAGA C/T TCTGGGTCCTAATGTAAGTAAGAAGCCCTCTTCTCCTGTTCCATGAACACCATCCTTTTCTG
TAACTTCTATTACACAGTATAGTGGTTCTGTAAGTTCACACAGCCCAGGGAGATGCTGGCTGCCCACTCCCCTCAACCCAGGCAAATTCC
TCGGGGTTAAAGTTATCTACTGCAAGTGACGATCTCTGGGTTTTTCTG-3'

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RS ID: 79741566 Link_out

Alleles: G/T

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
11 59857929

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_001142303 Link_out NP_001135775 Link_out 1 W [Trp] / G [Gly]
missense NM_000139 Link_out NP_000130 Link_out 1 W [Trp] / G [Gly]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TTTGGCTTCTATTATTAAAAAATGATACAATCTCGGGAAAATTTTTTTGATTTTCATGAAATTCATGTGTTTTTCTATAGGTAACAC
AAATTCTGACTGCTATGATATGCCTTTGTTTTGGAACAGTTGTCTGCTCTGTACTTGATATTTCACACATTGAGGGAGACATTTTTTCAT
CATTTAAAGCAGGTTATCCATTC G/T GGGGAGCCATATTTGTGAGTATATATCTATAATTGTTTCTGAAATAACACTGAACATAGGTT
TTTCTCTTTCTCAGATCTAACCAGTTGTTTATTCCCAGTATTAACATGATATTTATAATTCTTAATTATAAATTATATGTGAGCATATAT
AACATAGATATGCTCATTAACAACAACAAAAGATTCTTTTTACAATTA-3'

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RS ID: 77930519 Link_out

Alleles: G/T

Validation:

  • By cluster

Details:

Chromosome Reference Position
11 59861026

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_001142303 Link_out NP_001135775 Link_out 1 S [Ser] / A [Ala]
missense NM_000139 Link_out NP_000130 Link_out 1 S [Ser] / A [Ala]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TGCCAGCAAGTGCAGGCCCAGGTCTGAGTGTTCTTCATTATTATCAGGTGAGAGGAAGCCTGGGAGCAAACACTGCCAGCAGCATAG
CTGGGGGAACGGGAATTACCATCCTGATCATCAACCTGAAGAAGAGCTTGGCCTATATCCACATCCACAGTTGCCAGAAATTTTTTGAGA
CCAAGTGCTTTATGGCTTCCTTT G/T CCACTGTATGTATTTTTTTTTGTGTGGGAAGACTAAGATTCTGGGTCCTAATGTAAGTAAGA
AGCCCTCTTCTCCTGTTCCATGAACACCATCCTTTTCTGTAACTTCTATTACACAGTATAGTGGTTCTGTAAGTTCACACAGCCCAGGGA
GATGCTGGCTGCCCACTCCCCTCAACCCAGGCAAATTCCTCGGGGTTA-3'

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RS ID: 77076181 Link_out

Alleles: A/G

Validation:

  • By cluster

Details:

Chromosome Reference Position
11 59860938

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_001142303 Link_out NP_001135775 Link_out 3 L [Leu] / L [Leu]
coding-synonymous NM_000139 Link_out NP_000130 Link_out 3 L [Leu] / L [Leu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AGGGTTTCCCTTTTTAACCAAAATTTGGAAGCAATGTGGAATTTACTGGATGCATCCAGCCCTGAAATGAAGATAGGTTTATTGAAT
GTGCCAGCAAGTGCAGGCCCAGGTCTGAGTGTTCTTCATTATTATCAGGTGAGAGGAAGCCTGGGAGCAAACACTGCCAGCAGCATAGCT
GGGGGAACGGGAATTACCATCCT A/G ATCATCAACCTGAAGAAGAGCTTGGCCTATATCCACATCCACAGTTGCCAGAAATTTTTTGA
GACCAAGTGCTTTATGGCTTCCTTTTCCACTGTATGTATTTTTTTTTGTGTGGGAAGACTAAGATTCTGGGTCCTAATGTAAGTAAGAAG
CCCTCTTCTCCTGTTCCATGAACACCATCCTTTTCTGTAACTTCTATT-3'

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RS ID: 35407306 Link_out

Alleles: A/G

Validation:

  • By cluster

Details:

Chromosome Reference Position
11 59860907

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_001142303 Link_out NP_001135775 Link_out 2 S [Ser] / N [Asn]
missense NM_000139 Link_out NP_000130 Link_out 2 S [Ser] / N [Asn]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ACATGATCAAATAAATAATTAGTTTTCAATTAAGGAGAATATTTGAGGAAAGACCGTACGTGTTCATGTGGTTCCTGAAGGCAGTCC
AGTGAGAAAGTAATATATGCTCATTAAACAATGCGGACATTTTCAGGGTTTCCCTTTTTAACCAAAATTTGGAAGCAATGTGGAATTTAC
TGGATGCATCCAGCCCTGAAATGAAGATAGGTTTATTGAATGTGCCAGCAAGTGCAGGCCCAGGTCTGAGTGTTCTTCATTATTATCAGG
TGAGAGGAAGCCTGGGAGCAAACACTGCCAGCA A/G CATAGCTGGGGGAACGGGAATTACCATCCTGATCATCAACCTGAAGAAGAGC
TTGGCCTATATCCACATCCACAGTTGCCAGAAATTTTTTGAGACCAAGTGCTTTATGGCTTCCTTTTCCACTGTATGTATTTTTTTTTGT
GTGGGAAGACTAAGATTCTGGGTCCTAATGTAAGTAAGAAGCCCTCTTCTCCTGTTCCATGAACACCATCCTTTTCTGTAACTTCTATTA
CACAGTATAGTGGTTCTGTAAGTTCACACAGCCCAGGGAGATGCTGGCTGCCCACTCCCCTCAACCCA-3'

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RS ID: 35285786 Link_out

Alleles: C/T

Validation:

  • By cluster

Details:

Chromosome Reference Position
11 59856253

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_001142303 Link_out NP_001135775 Link_out 3 S [Ser] / S [Ser]
coding-synonymous NM_000139 Link_out NP_000130 Link_out 3 S [Ser] / S [Ser]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TAGTCTCAGGCAAAATTATGCTCCAGGAGTCTCAAATTTTCTTATTTCATATTAGTCTTTATTTAGTAGACTTCTTAATTTTTCTAT
TCATCACAAGTAAAAGCCTGTTGATCTTAATCAGCCAAGAAACTTATCTGTCTGGCAAATGACTTATGTATAAAGAGAATCATCAATGTC
ATGAGGTAACCCATTTCAACTGCCTATTCAGAGCATGCAGTAAGAGGAAATCCACCAAGTCTCAATATAATAATATTCTTTATTCCTGGA
CAGCTCGGTTAATGAAAAAATGGACACAGAAAG C/T AATAGGAGAGCAAATCTTGCTCTCCCACAGGAGCCTTCCAGGTAGGTACAAG
GTATTATTTTTTTCTACCCTCAGTCACTTAGTGGCAGGGGAAGTCATAGTCACGGTGCTTAGGAGATGAAACTTTATTGATTTAGGCATG
GATCCATCTAGTTTAATTAATATATTGGGTATGAGGAAGCTACTTGCTGTACTTTCCATGTGGTTCTCTCTCCCTGGAGAGGAACATTTT
TACTCAGCTTGCAAACTGGAAATAGATTTTCTCACATTAGAAGCTCATTTTCTGGGTATGAGACAGGA-3'

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RS ID: 35107181 Link_out

Alleles: C/G

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
11 59857216

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_001142303 Link_out NP_001135775 Link_out 3 G [Gly] / G [Gly]
coding-synonymous NM_000139 Link_out NP_000130 Link_out 3 G [Gly] / G [Gly]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ATTAAGAATAGGAAAATTTGGCATGGATTTTGCTCCATTTTGTCCCATCTAATCACTTGGATAGTGTTCAGGTGTTCTTGGTCAGTT
ACTTGGATGCTCTGAGCTTTAGTTTCTTGGTGATTACAATGAAGATTTGAATTACAGGATGGCTTTGAAAAAATAAACAAAACTCCCCTT
TCTGTCTGTCGAGAATGTTGCACAGGGAGTTACAGAATGTTCTCATGACTGAATTGCTTTTAAATTTCACAGTGTGCCTGCATTTGAAGT
CTTGGAAATATCTCCCCAGGAAGTATCTTCAGG C/G AGACTATTGAAGTCGGCCTCATCCCCACCACTGCATACATGGCTGACAGTTT
TGAAAAAAGAGCAGGAGTTCCTGGGGGTGAGTGAGCCTCCTCCAACTTTGACTAGAGTAAGGGTTGGGTCTAGAAAAGAATATTGAGTTG
CATCAACTGTTTTCCCACTTGGATTCATGAGAGGTGTTAGGTCCTTTAAAAAACATGGTAGATAAAGAGTTGACACTAACTGGGTCCTTT
TGGGAAGAGAGAAGCATTTCCTCATAAAGACTTTAAATTGCTAGGACGAGAATGGCCAACAGGAGTGA-3'

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RS ID: 35033981 Link_out

Alleles: C/T

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
11 59860922

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_001142303 Link_out NP_001135775 Link_out 2 T [Thr] / M [Met]
missense NM_000139 Link_out NP_000130 Link_out 2 T [Thr] / M [Met]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TAATTAGTTTTCAATTAAGGAGAATATTTGAGGAAAGACCGTACGTGTTCATGTGGTTCCTGAAGGCAGTCCAGTGAGAAAGTAATA
TATGCTCATTAAACAATGCGGACATTTTCAGGGTTTCCCTTTTTAACCAAAATTTGGAAGCAATGTGGAATTTACTGGATGCATCCAGCC
CTGAAATGAAGATAGGTTTATTGAATGTGCCAGCAAGTGCAGGCCCAGGTCTGAGTGTTCTTCATTATTATCAGGTGAGAGGAAGCCTGG
GAGCAAACACTGCCAGCAGCATAGCTGGGGGAA C/T GGGAATTACCATCCTGATCATCAACCTGAAGAAGAGCTTGGCCTATATCCAC
ATCCACAGTTGCCAGAAATTTTTTGAGACCAAGTGCTTTATGGCTTCCTTTTCCACTGTATGTATTTTTTTTTGTGTGGGAAGACTAAGA
TTCTGGGTCCTAATGTAAGTAAGAAGCCCTCTTCTCCTGTTCCATGAACACCATCCTTTTCTGTAACTTCTATTACACAGTATAGTGGTT
CTGTAAGTTCACACAGCCCAGGGAGATGCTGGCTGCCCACTCCCCTCAACCCAGGCAAATTCCTCGGG-3'

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RS ID: 17860460 Link_out

Alleles: A/C

Validation:

Not Completed

Details:

Chromosome Reference Position
11 59863072

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_000139 Link_out NP_000130 Link_out 3 S [Ser] / S [Ser]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AACTTGTCATTGACTGACATGATTTCTTTTGGGCCCACTTGGCCAGCTAGTCTGGTTTGGTTTTCTGGAAATGAAAGAAATAATCAG
AGTTTAATGACAGAGAGCGTGAGACCCAGAAAGACAAAAGTAGATGAGGTAAGTCTCTTGAGCGAGACTTCTAGGGATGGGAAATTTGTG
GTGATTGATATGAAATGATTTTTCCCTTATCAGGTTCCAGAGGATCGTGTTTATGAAGAATTAAACATATATTC A/C GCTACTTACAG
TGAGTTGGAAGACCCAGGGGAAATGTCTCCTCCCATTGATTTATAAGAATCACGTGTCCAGAACACTCTGATTCACAGCCAAGGATCCAG
AAGGCCAAGGTCTTGTTAAGGGGCTACTGGAAAAATTTCTATTCTCTCCACAGCCTGCTGGTTTTACATTAGATTTATTCGCCTGATAAG
AATATTTTGTTTCTGCTGCTTCTGTCCACCTTAATATTCTCCTTCTATTTGTAGATATGA-3'

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RS ID: 569108 Link_out

Alleles: C/T

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
11 59863104

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_000139 Link_out NP_000130 Link_out 2 E [Glu] / G [Gly]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ATTTGCATAGGAAGTTATATATAGTGTAAGTAATACATATGTGTGTGTGACTGTGACTGTGTGGGTATGGGTGGATGGTACAAATCA
TGCCCAACTGTAACTATTAAGAATGCTAAAAAAAAAAAAAAACCCTAAGAACCAAATATTATCAAACTGTCAAAGTTTAACTCAACTTTC
AGCCAGCCTTCTTTTTTTCTGTATTTGCACAGTTATAATCAAACAGTTAAATCTTGCTTACTACATGTTGACTTTCCAGCAGAGATGTGT
GTGGTCATAATATAAAACAAGAAAAATAGGAGTCTATCATATCTACAAATAGAAGGAGAATATTAAGGTGGACAGAAGCAGCAGAAACAA
AATATTCTTATCAGGCAAATAAATCTAATGTAAAACCAGCAGGCTGTGGAGAGAATAGAAATTTTTCCAGTAGCCCCTTAACAAGACCTT
GGCCTTCTGGATCCTTGGCTGTGAATCAGAGTGTTCTGGACACGTGATTCTTATAAATCAATGGGAGGAGACATT C/T CCCCTGGGTC
TTCCAACTCACTGTAAGTAGCTGAATATATGTTTAATTCTTCATAAACACGATCCTCTGGAACCTGATAAGGGAAAAATCA-3'

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RS ID: 535630 Link_out

Alleles: G/T

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
11 59861532

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_000139 Link_out NP_000130 Link_out 3 N [Asn] / K [Lys]
near-gene-3 NM_001142303 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GGATATATTATGAAATGTGTGCTACTTATGGGTATAAAATGTGATTTAAAATGTGAGATTTGTAAACCAAAGTAATAAAACTTGGAG
AAACTATTTTCTGGAAGAAATGTTTCAGAAAACCCAGGCCATATTTTTAAGGAATAAAGCTCCAATTCGTTAACCTGTCATTCAAGATTT
TATATCGGGCTTCTATCTACCTT G/T TTTCCTTTGAGTTCTTCCCCAGCTCCACAGATTGTGAGTGACACAGCACTACCAAGTCCCAG
AATGGTGAGAAACAGCATCATCACTACAATTTCCTATTGAACAGCAACAAATGACAAACAAAAAGAGTCACATGGTATTCGCCCCAAAAG
TTTATTTTCTTATAGCATCTCCTGTTTTCATCTCCCTACCATCTGACC-3'