SNPJam Report for LTA

Showing coding SNPs for LTA (Gene ID: 4049)

Show all SNPs for this gene at dbSNP

This SNP viewer is in beta and your feedback is appreciated!

This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

[Top]

RS ID: 36065690 Link_out

Alleles: -/G

Validation:

Not Completed

Details:

Chromosome Reference Position
6 31528632

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AACAGAGGGAGCCCACTCCTATGCCTCCCCCTGCCATCCCCCAGGAACTCAGTTGTTCAGTGCCCACTTCCTCAGGGATTGAGACCT
CTGATCCAGACCCCTGATCTCCCACCCCCATCCCCTATGGCTCTTCCTAGGAGACCCCAGCAAGCAGAACTCACTGCTCTGGAGAGCAAA
CACGGACCGTGCCTTCCTCCAGGATGGTTTCTCCTTGAGCAACAATTCTCTCCTGGTCCCCACCAGTGGCATCTACTTCGTCTACTCCCA
GGTGGTCTTCTCTGGGAAAGCCTACTCTCCCAA -/G GGCCACCTCCTCCCCACTCTACCTGGCCCATGAGGTCCAGCTCTTCTCCTCC
CAGTACCCCTTCCATGTGCCTCTCCTCAGCTCCCAGAAGATGGTGTATCCAGGGCTGCAGGAACCCTGGCTGCACTCGATGTACCACGGG
GCTGCGTTCCAGCTCACCCAGGGAGACCAGCTATCCACCCACACAGATGGCATCCCCCACCTAGTCCTCAGCCCTAGTACTGTCTTCTTT
GGAGCCTTCGCTCTGTAGAACTTGGAAAAATCCAGAAAGAAAAAATAATTGATTTCAAGACCTTCTCC-3'

[Top]

RS ID: 2229094 Link_out

Alleles: C/T

Validation:

  • By frequency
  • By hap map
  • By cluster

Details:

Chromosome Reference Position
6 31527968

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TCTGCCTGGGCCTCGGTCCCTCCTGCACCTGCTGCCTGGATCCCCGGCCTGCCTGGGCCTGGGCCTTGGTGGGTTTGgttttggttt
ccttctctgtctctgactctccatctgtcagtctcattgtctctgtcacacattctctgtttctgccatggttcctctctgttcccttcc
tgtctctctctgtctccctctgctcaccttggggtttctctgactgcatcttgtccccttctctgtcgatctctctctCGGGGGTCGGGG
GGTGCTGTCTCCCAGGGCGGGAGGTCTGTCTTCCGCCGCGTGCCCCGCCCCGCTCACTGtctctctctctctctctctttctctGCAGGT
TCTCCCCATGACACCACCTGAACGTCTCTTCCTCCCAAGGGTG C/T GTGGCACCACCCTACACCTCCTCCTTCTGGGGCTGCTGCTGG
TTCTGCTGCCTGGGGCCCAGGTGAGGCAGCAGGAGAATGGGGGCTGCTGGGGTGGCTCAGCCAAACCTTGAGCCCTAGAGCCCCCCTCAA
CTCTGTTCTCCCCTAGGGGCTCCCTGGTGTTGGCCTCACACCTTCAGCTGCCCAGACTGCCCGTCAGCACCCCAAGATGCATCTTGCCCA
CAGCAACCTCAAACCTGCTGCTCACCTCATTGGTAAACATCCACCTGACCTCCCAGACATGTCCCCACCAGCTCTCCTCCTACCCCTGCC
TCAGGAACCCAAGCATCCACCCCTCTCCCCCAACTTCCCCCACGCTAAAAAAAACAGAGGGAGCCCACTCCTATGCCTCCCCCTGCCA-3
'

[Top]

RS ID: 2229092 Link_out

Alleles: A/C

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
6 31528169

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GCCGCGTGCCCCGCCCCGCTCACTGTCTCTCTCTCTCTCTCTCTTTCTCTGCAGGTTCTCCCCATGACACCACCTGAACGTCTCTTC
CTCCCAAGGGTGTGTGGCACCACCCTACACCTCCTCCTTCTGGGGCTGCTGCTGGTTCTGCTGCCTGGGGCCCAGGTGAGGCAGCAGGAG
AATGGGGGCTGCTGGGGTGGCTCAGCCAAACCTTGAGCCCTAGAGCCCCCCTCAACTCTGTTCTCCCCTAGGGGCTCCCTGGTGTTGGCC
TCACACCTTCAGCTGCCCAGACTGCCCGTCAGC A/C CCCCAAGATGCATCTTGCCCACAGCACCCTCAAACCTGCTGCTCACCTCATT
GGTAAACATCCACCTGACCTCCCAGACATGTCCCCACCAGCTCTCCTCCTACCCCTGCCTCAGGAACCCAAGCATCCACCCCTCTCCCCC
AACTTCCCCCACGCTAAAAAAAACAGAGGGAGCCCACTCCTATGCCTCCCCCTGCCATCCCCCAGGAACTCAGTTGTTCAGTGCCCACTT
CCTCAGGGATTGAGACCTCTGATCCAGACCCCTGATCTCCCACCCCCATCCCCTATGGCTCTTCCTAG-3'

[Top]

RS ID: 2071589 Link_out

Alleles: A/G

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
6 31528173

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TGGATGTTTACCAATGAGGTGAGCAGCAGGTTTGAGGGTGCTGTGGGCAAGATGCATCTT A/G GGGTGCTGACGGGCAGTCTGGG
CAGCTGAAGGTGTGAGGCCAACACCAGGGAGCCCCTAG-3'

[Top]

RS ID: 1041981 Link_out

Alleles: A/C

Validation:

  • By cluster
  • By frequency
  • By 2 hit 2 allele
  • By hap map

Details:

Chromosome Reference Position
6 31528196

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TGTCCCCTTCTCTGTCGATCTCTCTCTCGGGGGTCGGGGGGTGCTCTCTCCCAGGGCGGGAGGTCTGTCTTCCGCCGCGTGCCCCGC
CCCGCTCACTGtctctctctctctctctctttctctGCAGGTTCTCCCCATGACACCACCTGAACGTCTCTTCCTCCCAAGGGTGTGTGG
CACCACCCTACACCTCCTCCTTCTGGGGCTGCTGCTGGTTCTGCTGCCTGGGGCCCAGGTGAGGCAGCAGGAGAATGGGGGCTGCTGGGG
TGGCTCAGCCAAACCTTGAGCCCTAGAGCCCCCCTCAACTCTGTTCTCCCCTAGGGGCTCCCTGGTGTTGGCCTCACACCTTCAGCTGCC
CAGACTGCCCGTCAGCACCCCAAGATGCATCTTGCCCACAGCA A/C CCTCAAACCTGCTGCTCACCTCATTGGTAAACATCCACCTGA
CCTCCCAGACATGTCCCCACCAGCTCTCCTCCTACCCCTGCCTCAGGAACCCAAGCATCCACCCCTCTCCCCCAACTTCCCCCACGCTAA
AAAAAACAGAGGGAGCCCACTCCTATGCCTCCCCCTGCCATCCCCCAGGAACTCAGTTGTTCAGTGCCCACTTCCTCAGGGATTGAGACC
TCTGATCCAGACCCCTGATCTCCCACCCCCATCCCCTATGGCTCTTCCTAGGAGACCCCAGCAAGCAGAACTCACTGCTCTGGAGAGCAA
ACACGGACCGTGCCTTCCTCCAGGATGGTTTCTCCTTGAGCAACAATTCTCTCCTGGTCCCCACCAGTGGCATCTACTTCGTCTACTC-3
'