SNPJam Report for LMAN1

Showing coding SNPs for LMAN1 (Gene ID: 3998)

Show all SNPs for this gene at dbSNP

This SNP viewer is in beta and your feedback is appreciated!

This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

[Top]

RS ID: 78116104 Link_out

Alleles: A/C

Validation:

  • By cluster

Details:

Chromosome Reference Position
18 57006087

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_005570 Link_out NP_005561 Link_out 1 L [Leu] / V [Val]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CTGAATAATCCACATTCTATGAGCACATAGTACAGTTGCCCTTCTTCTTTACTTCCCTTCCAGCAAAGGGTAAATGGGGCACATCTG
CATATTCTGCAAGCCCACCTGCCCATGCTGCCCAGGCATTCCTGCTCCTCTTTTAGAGATTTCCTCTGTTAAGGAAGAGACATATCTTCT
CTGTTCATCAAGAATCATATCTA A/C CTGCCGGTTCAGCTGCTTGATTTCAAGATGAATACGATTCTGTCCTTCAAAGACTTGTCTTA
GCTCTCGATCTCCTACACTCTCAAATATTTCCTCCGCTGAAAAGGAAATAAATAAAAATGATCAGAGTCACCTACACATATGTAGTTTTT
GAAATAACGTAAGTGACCAAAGTGCCAACATTCAGCAAAATTAGGACA-3'

[Top]

RS ID: 71678369 Link_out

Alleles: (LARGEDELETION)/-

Validation:

Not Completed

Details:

Chromosome Reference Position
18 56998365

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
frameshift NM_005570 Link_out NP_005561 Link_out 3 Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GAGGGCAAGTGTGTTTACGTTATACAGGGAAACCTGCAATATTGGAGACTTAGGGGGTAACATTCATATCCAGGGGTTGCCCCCACT
TTATTTACCCTCTTACTGGTCAATATTCTGCTCAGAGGCTGCATCATACTGACCAGAAATTCACTGAAATTTAGACAGATTTACATACTG
TGAACAAATTAAAATGTGGTTGTCTTTGCTTTAAGGTTTATTCTTAACTGCAAATCAATGTTTAAACAGTTATTTTATTAAGAAAATTAA
TAATTTAGACTATGAAGCAATTTAAATACTTAAATTCCCTCAAAACGACATCATTTTGTACACAAATAGATGAAGTACACAGGAAAATGG
TAGTCAAAAGAATTTTTTGGCAGCTGCTTCTTGCTGAGACCTA (LARGEDELETION)/- TACATGATATAACCAATGAATAATACAG
TTTGCACCACAACAAATATAATGAAGTGGACCGTAGACAAACATGATGGAAATGGTGGTAGTTCTGGGCATTTCGGCTTTTCATTTGATG
GCTGTAAGGCAAATGACTTTCTATTACAGTTAGTCAAAATAGCAGTTTGGAAAAAGAAATAAATGTGAAATCTTTATAAAACTGTTTGCT
ATATAAACAAGTATTTTCATTTTTTCATCCCCCAGAAAACCTTCTATCCCCTTAACTTTTACTGACAACTGTTTTTGAAGGAGTAGTTGA
CACTGGAAGGCCTCCACCTTTTTACTACCCAGTCACTAACTCACTGCCTCCTGGCTCCTGTCTGCATTACAGTATATGATGATGTTGCTG
TCCCTGAGGTC-3'

[Top]

RS ID: 61733371 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
18 57006184

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_005570 Link_out NP_005561 Link_out 3 A [Ala] / A [Ala]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TCAAAGACTTGTCTTAGCTCTCGATCTCCTACACTCTCAAATATTTCCTC A/G GCTGAAAAGGAAATAAATAAAAATGATCAGAG
TCACCTACACATATGTAG-3'

[Top]

RS ID: 41499255 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
18 56998685

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_005570 Link_out NP_005561 Link_out 3 V [Val] / V [Val]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AGTTGAATATTTCTAATTAAACAGATGCAGAAAAATATTGGGTCACATTTTATCAAGAGACTTACCTATACATGATATAACCAATGA
ATAATACAGTTTG C/T ACCACAACAAATATAATGAAGTGGACCGTAGACAAACATGATGGAAATGGTGGTAGTTCTGGGCATTTCGGC
TTTTCATTTGATGGCTGTAAGGCAAATG-3'

[Top]

RS ID: 41476148 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
18 57014746

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_005570 Link_out NP_005561 Link_out 2 P [Pro] / L [Leu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CTGGCAGAAACAAGATCCAAACCTAAGTTAGTCTTCCAAAACGTTCAGCTAAAAGGCAAACTAAACTGATAAAGTTTTTGAAAATAT
GTGTAAAATTACC A/G GCTCTTTTCCAGGTTCAGTCAACTGGAAAGTCAGAAAAGAAAGGACATCATGGTCATCTACAAATTAAAAAA
AAAAAAGTCTGAAAAAGTTCCATAGGAG-3'

[Top]

RS ID: 41473345 Link_out

Alleles: C/T

Validation:

  • By cluster

Details:

Chromosome Reference Position
18 57022623

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_005570 Link_out NP_005561 Link_out 3 L [Leu] / L [Leu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ACAGTCCTGACAATAAATATACCTTTCCATCATTGTCAAAAGAATCAAAAAATATTCCAACACCATTCCACAGATCAGCTGATCCAA
ACACAGGGCCCTC C/T AAGCCTTGATTTTCTGCATACCAAATTGCCTGAAAATATGTAATAGGGAACAGTTAGAGGCTAGTGGTATAT
GCATTTATGCACATTTTCTAAGTTAAAG-3'

[Top]

RS ID: 41419147 Link_out

Alleles: G/T

Validation:

  • By cluster

Details:

Chromosome Reference Position
18 57016361

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_005570 Link_out NP_005561 Link_out 3 A [Ala] / A [Ala]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CCGAACAATGTAAGTAGAAAATTAGCAATCTCAACAGACCAAAAGACTGGCACAAGAGGTGATGGGAAAGTTCCAAACAGTCTTAAA
AAGTTATTAGTATAAACAAGTCTACATATCCCTAATATACTATTCCCAATAAAACACACCTCACAAACTTTTAATATCATCAGACTGCAA
GATTTACCTGCAAGACCTCCAGT G/T GCAGCAGATATTCCAAAATGCCCTTGTGCAGGGATAATCATATTTTCCACTTTGGCACAAAA
TTCATAATCATTTTTATCTGGTGTAAAGCCATTATTGATCATTACCTAGAAAGACATATCATAGCTATAGCTTTTGCAAAAGACATTAGA
AAATAAATTTCAATCGATCCATTTTATGACTACTATTCAGTTTTGTTT-3'

[Top]

RS ID: 33926449 Link_out

Alleles: A/G

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
18 57026361

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_005570 Link_out NP_005561 Link_out 2 V [Val] / A [Ala]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AGACTCGGGGACAAGCGGAGGGAACCGTGCGAACCAGGAGGGACCCGGCGGAGGGGCTGCCAGGAGGGTCCCCTCCACAGCGCATAT
GGTGTGCAGCTGCTGGAACGGGAACCTCAGCACACCAGGGTAGCCGCGGATGAAAGGCGAAGAGGCAGCAGAAGGGGGAGAGGAACCCGG
CCCCCAGCCCTCTGCTCCGGCTTACTCCCCGCGTGGGCCCAGAAGGGCACGGTCCCGTCGCTCTGCACCAGGTGCGGCCCCTTGAAGCTG
TATTTGTACTCGAAACGGCGATGTGGCAACGCG A/G CCGCGGGGTCTCCTCCCACGCCGTCGCCCCGGACGAAGCGACCGAGTGACAG
CAGCAAGGCGCAGAACAGCGGCCGAACTCTGGCCCGGAGACCCCTTTGCCTGGATCCCGCCATCTTGGATTCTGGAACGCGGAGGAGGGC
GGGAGAGGGAGGGGCGCGGATGGCTGCGGATGGCCAACAGGGCGCTCGCTGATTGGCAGAGCCCGGGGGACCCCCAAGGGCAAGGGGTGA
GCCCCGCCCCCGGCCTCCGCTTTCCGCGCGGCCGCACGGCCAGGAGCAGCTGTGGGCGGGGCCACGCG-3'

[Top]

RS ID: 11538380 Link_out

Alleles: C/G

Validation:

Not Completed

Details:

Chromosome Reference Position
18 57022741

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_005570 Link_out NP_005561 Link_out 1 G [Gly] / R [Arg]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AAGTTGAGGTGACATTTCGAGTGACTGGAAGAGGTCGAATTGGAGCTGAT C/G GCCTAGCAATTTGGTATGCAGAAAATCAAGGC
TTGGAGGGCCCTGTGTTT-3'

[Top]

RS ID: 3737392 Link_out

Alleles: A/G

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
18 57006077

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_005570 Link_out NP_005561 Link_out 2 I [Ile] / T [Thr]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GCTCCTCTTTTAGAGATTTCCTCTGTTAAGGAAGAGACATATCTTCTCTGTTCATCAAGA A/G TCATATCTAACTGCCGGTTCAG
CTGCTTGATTTCAAGATGAATACGATTCTGTCCTTCAA-3'

[Top]

RS ID: 2298711 Link_out

Alleles: A/T

Validation:

  • By frequency
  • By submitter
  • By cluster

Details:

Chromosome Reference Position
18 57000469

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_005570 Link_out NP_005561 Link_out 1 M [Met] / L [Leu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ATCATCCATTATATTCAATATCCACTTATACTATTGGTTTTAACACAGATTACCTAGTAGTATTTTCTACATGGTATTTTTAGATGA
CCTTTAGTAAAATATAAAGGCATAATGTCGTTTTATAAATTATTTTCCAATTTTGAACACAACTCGATTTTTAAAGATACTTTAYCTGTT
TTTTTTTTTAAATGATGTAATATATTAGACTTGAAAAGTAAAAGTATTGGAGATCTGTGACTGAAAAAAAANANCTTTATAGTGATTTTA
TTGTATCAAGAGACTTTCTGTTTCAGAAATTCC A/T TGAGTGAAACCGTCAGACTGGTCAGTGGAATGCAGCACCCTGGCTCTGCTGG
AGGCGTCTATGAGACAACACAGCACTTCATTGACATCAAAGAGCACCTGCACATAGTAAAGAGGGACATAGATAACTTAGTGCAGCGAAA
TATGGTAACTTTGTTTCCTTTNCYTTTTATAATTATAATCTTTAGGAAAGGARGAACTCATACTCTACTGCAAGTATTTTAACCCTTTAG
TTAATGCTAATGCTTATTTTTAATGWTTAAGGTAGAATTGTCCCATTTATTGCAGATCTCCATGTGTC-3'

[Top]

RS ID: 1802621 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
18 57013240

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_005570 Link_out NP_005561 Link_out 2 Y [Tyr] / C [Cys]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ATTTCGGAAAAGGAAAAAGAAAAGT A/G TCAGGAGGAATTTGAGCACTTTCAA-3'

[Top]

RS ID: 1802620 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
18 57016381

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_005570 Link_out NP_005561 Link_out 1 H [His] / Y [Tyr]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AAATATGATTATCCCTGCACAAGGG C/T ATTTTGGAATATCTGCTGCAACTGG-3'

[Top]

RS ID: 1127220 Link_out

Alleles: A/G

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
18 57022754

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_005570 Link_out NP_005561 Link_out 3 R [Arg] / R [Arg]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TTAGCCCTAAACTTTTAAAGTTAAAACTGTCAACATGAAATTTTTTCCAAATCATTATTGTACAGGTTACTAAGTCTCTGTAGGTAT
ATTTAGCAGTTTGGAAATGATCATTGAGTTTTACCTAATTATAACTTAAAGCTTTTTTCCCCTGATTTCTGTTCTAGATGCTATTCCAAG
TTCAGATCAAATTCGAGTAGCACCATCTTTAAAAAGCCAAAGAGGCTCAGTGTGGACAAAGACAAAAGCGGCCTTTGAGAACTGGGAAGT
TGAGGTGACATTTCGAGTGACTGGAAGAGGTCG A/G ATTGGAGCTGATGGCCTAGTATGATCATTTCTTTAACTTAGAAAATGTGCAT
AAATGCATATACCACTAGCCTCTAACTGTTCCCTATTACATATTTTCAGGCAATTTGGTATGCAGAAAATCAAGGCTTGGAGGGCCCTGT
GTTTGGATCAGCTGATCTGTGGAATGGTGTTGGAATATTTTTTGATTCTTTTGACAATGATGGAAAGGTATATTTATTGTCAGGACTGTT
ATCCACTTTAATACATCTATCAACAGAGTTAGGCTGTGAGAAATAATAGCTTATTCAATGCTTTCATC-3'

[Top]

RS ID: 1043302 Link_out

Alleles: A/G

Validation:

  • By cluster

Details:

Chromosome Reference Position
18 57026436

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_005570 Link_out NP_005561 Link_out 2 R [Arg] / Q [Gln]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AAGGTTGGAGTCCTTTCCCCACCCCCGGAGGGTGGGCGGGGCCGAAGGACCGCACCGCCCCAGACCCGCCCCCTGCGCGTGGCCCCG
CCCACAGCTGCTCCTGGCCGTGCGGCCGCGCGGAAAGCGGAGGCCGGGGGCGGGGCTCACCCCTTGCCCTTGGGGGTCCCCCGGGCTCTG
CCAATCAGCGAGCGCCCTGTTGGCCATCCGCAGCCATCCGCGCCCCTCCCTCTCCCGCCCTCCTCCGCGTTCCAGAATCCAAGATGGCGG
GATCCAGGCAAAGGGGTCTCCGGGCCAGAGTTC A/G GCCGCTGTTCTGCGCCTTGCTGCTGTCACTCGGTCGCTTCGTCCGGGGCGAC
GGCGTGGGAGGAGACCCCGCGGTCGCGTTGCCACATCGCCGTTTCGAGTACAAATACAGCTTCAAGGGGCCGCACCTGGTGCAGAGCGAC
GGGACCGTGCCCTTCTGGGCCCACGCGGGGAGTAAGCCGGAGCAGAGGGCTGGGGGCCGGGTTCCTCTCCCCCTTCTGCTGCCTCTTCGC
CTTTCATCCGCGGCTACCCTGGTGTGCTGAGGTTCCCGTTCCAGCAGCTGCACACCATATGCGCTGTG-3'