SNPJam Report for LGSN

Showing coding SNPs for LGSN (Gene ID: 51557)

Show all SNPs for this gene at dbSNP

This SNP viewer is in beta and your feedback is appreciated!

This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

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RS ID: 112947248 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
6 63990962

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_001143940 Link_out NP_001137412 Link_out 2 T [Thr] / I [Ile]
missense NM_016571 Link_out NP_057655 Link_out 2 T [Thr] / I [Ile]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AAAATGTTAAAGCAGGAAAAGATATAATCTTTGAATTTAAAATTTCGGGCACACCAAAAATGCAAAAATCATAGATGAAAGCAGAAA
GCAGGGAAAAGCCAGAGGCCTGCAGATGGCTCAGCTGCCTCTTTGCAATGTACCTTGGGGAAGTCAAAAGAGGCTCACCAGTCACAGTGA
AGGTATCACATATCACTCTTGCA A/G TTCTGTCAGCCCATGGCAAAACTCTAAAGGTTGATAACTCTGGCATTAGGACTATGTCGCTA
TTAAAACATGTGGCTCTTATGTTATTCATTTCATTGTCCTTTGGATTTGGTATCACTTCAAGATAACCTCGGGGCATGCAAACACCATGG
CTCACTTTCTCCTAAAGAAGGAAAAAAATGAAGAAATTAGGTTTTGAA-3'

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RS ID: 79741917 Link_out

Alleles: G/T

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
6 63995590

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_001143940 Link_out NP_001137412 Link_out 1 Q [Gln] / K [Lys]
missense NM_016571 Link_out NP_057655 Link_out 1 Q [Gln] / K [Lys]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AATTGCTGTATAAGATTACAAGAAAATAAGAAAGAGTAATAAGAACTGTTTGCTTGCTAATGGTCATGAAATTACATTTAGTCACAA
CTGTGTAAAACTCACTTGAAAAAAGTGTGCAGGGATAGTCTTAGACCTGGACACGCCGTGGAGGTCTGTTGCTTCAAATCGTACAAACTG
GAGGCGATTTTTGGCCATGGCTT G/T TCTAATGTGTTTCATTCTAGAAGAGAGTTGAGGTGGGGTCAAAATTTGACTGCTGTCCCTCA
TGCAATCTGCAAAATAAAAAAATAGGTTCTAACTCACGAGATCATGATGGACTGAGAAGCAAAAGGAGACTGGAGACTAGTGAATTAGTC
AATATTATTAACAAAAACATTATATATTCATCATGTCACTGGCTTAGA-3'

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RS ID: 76965866 Link_out

Alleles: C/G

Validation:

Not Completed

Details:

Chromosome Reference Position
6 63990809

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
intron NM_001143940 Link_out Not Applicable Not Applicable Not Applicable
missense NM_016571 Link_out NP_057655 Link_out 2 P [Pro] / R [Arg]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ATGCATTATCAGCTGAGCTAATGCCAAATTCAGGCAGGAAAGAGATTTCCATCTGACCAGGCCTGGTAGAGGAGGAAAAACTCTCGA
CATTGGCTCCAGTGTGATACAAGCCATCAACAAGTTCCTGCATGAAGGGCTGATCATGGTTATTTAAAAATGTTAAAGCAGGAAAAGATA
TAATCTTTGAATTTAAAATTTCG C/G GCACACCAAAAATGCAAAAATCATAGATGAAAGCAGAAAGCAGGGAAAAGCCAGAGGCCTGC
AGATGGCTCAGCTGCCTCTTTGCAATGTACCTTGGGGAAGTCAAAAGAGGCTCACCAGTCACAGTGAAGGTATCACATATCACTCTTGCA
GTTCTGTCAGCCCATGGCAAAACTCTAAAGGTTGATAACTCTGGCATT-3'

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RS ID: 73432866 Link_out

Alleles: A/G

Validation:

  • By cluster

Details:

Chromosome Reference Position
6 63990478

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_016571 Link_out NP_057655 Link_out 3 N [Asn] / N [Asn]
missense NM_001143940 Link_out NP_001137412 Link_out 2 T [Thr] / I [Ile]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CTAGTTTATTTTCTATCCGGGTGCCTTTCTCTCCATGACATTTGATATTAAATATACAGCTGTTGTCATTGTATCCCCATGTTGTAG
GCACACTCTTCTTCAGGTCTTTCCTGTCCTTGGAATAACGCTTTCGGCAGCTAACAGAAGGCGCCATCAGGCAGCTGAGCGCAGCAGAGT
GCTTCAAGAGTCCTGCCAACCATTTTTTCCCAGTGATCGTGAGCTGCTCAGTTCCAGAAGTGCTGCAGAACAT A/G TTTTTCTTCCTA
TCGACATCCCAGAGACTATGAGACAAAATCCCTGAATCACAAAATCCAGTCTCAATGAAGAAGCTGGCAATGTAATTATATTTCCTTGCC
ACTTCTTTGACACCTGTTCTGAGGGTAAATGCATTATCAGCTGAGCTAATGCCAAATTCAGGCAGGAAAGAGATTTCCATCTGACCAGGC
CTGGTAGAGGAGGAAAAACTCTCGACATTGGCTCCAGTGTGATACAAGCCATCAACAA-3'

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RS ID: 62414973 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
6 63989999

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_016571 Link_out NP_057655 Link_out 2 A [Ala] / V [Val]
utr-3 NM_001143940 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TCTTCTCAGCAGTCCTACTTCATCTGTCAAATATTCCATGGACAAAAAAAAAAGTCAAAAGCATTCGTAATCTTGTTATTGTTGCTG
TTGTTAATTACAAAAGTTCAGTCTTTTTGTTTTGGTAGATTAGCTTTAAGTAACAATTACATGTCTAAAGGAGTAGTTGTGAGCTCTATT
CTAAATAAAATACTCTAAGAATTTATTTCTCTCTGCAGCTATTTCTTCATTCTCCAACTCATATTTCTTCATG A/G CAACAAAATATC
GAATAAAGGTTTCTCCTAGAGCCTGTCTCAGGCATTGATCTTCTTCCAGTGCCACAAGGGCATCTTCTAGTTTTAAAGGGATCTCAGAAG
GTTCCACTTGGTAAAAGTCTGTGCTCTCATCTGGACCAGCCAAGACCTCATTACTGCTATGAAGTCCATCTAAGCCGGCAGCAACAGTTG
CAGCCAGCACCAAGTAAGGGTTTGCTGTTGCTGAGCCTAGTTTATTTTCTATCCGGGT-3'