SNPJam Report for HTR6

Showing coding SNPs for HTR6 (Gene ID: 3362)

Show all SNPs for this gene at dbSNP

This SNP viewer is in beta and your feedback is appreciated!

This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

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RS ID: 8192534 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
1 20005822

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_000871 Link_out NP_000862 Link_out 3 P [Pro] / P [Pro]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AACAGGGCCCAGTTTAATCCTGGCACTAGGGCTCAGTCTAGAATTAGGATTGAAGCTCAGTCTGTGGCTAGGATCAGGGTCAGACGG
GGGCCCTTTCTCAACGGACTCATGTGGCCTTCCTTTCCGCAGGTGCCCAGGACCCCACGCCCAGGGGTGGAGTCTGCTGACAGCAGGCGT
CTAGCCACGAAGCACAGCAGGAAGGCCCTGAAGGCCAGCCTGACGCTGGGCATCCTGCTGGGCATGTTCTTTGTGACCTGGTTGCCCTTC
TTTGTGGCCAACATAGTCCAGGTAATGCCACGGCAGGGGGCAGGTGAGTCCGGCCCTTGCAGGAGAGGCCCTGGATCCCAGCCCAGGCAT
GGGGACAGGGGAGGGTAGGCTGCCTCTCGTGGTGCGTGTGTGTGTGTGTCTGCTCCATCCATGCTGGGAAGGGTGGCCTGGGTCCCTGCC
CTGGGACCAGGCATGATGCATCCCCTCCCCCCAGGCCGTGTGCGACTGCATCTCCCCAGGCCTCTTCGATGTCCTCACATGGCTGGGTTA
CTGTAACAGCACCATGAACCCCATCATCTACCCACTCTTCATGCGGGACTTCAAGCGGGCGCTGGGCAGGTTCCTGCCATGTCCACGCTG
TCCCCGGGAGCGCCAGGCCAGCCTGGCCTCGCCATCACTGCGCACCTCTCACAGCGGCCCCCGGCCCGGCCTTAGCCTACAGCAGGTGCT
GCCGCTGCCCCTGCCGCCGGACTCAGATTCGGACTCAGACGCAGGCTCAGGCGGCTCCTCGGGCCTGCGGCTCACGGCCCAGCTGCTGCT
TCCTGGCGAGGCCACCCAGGACCCCCCGCTGCCCACCAGGGCCGCTGCCGCCGTCAATTTCTTCAACATCGACCCCGCGGAGCC C/T G
AGCTGCGGCCGCATCCACTTGGCATCCCCACGAACTGACCCGGGCTTGGGGCTGGCCAATGGGGAGCTGGATTGAGCAGAACCCAGACCC
TGAGTCCTTGGGCCAGCTCTTGGCTAAGACCAGGAGGCTGCAAGTA-3'

[Top]

RS ID: 8192533 Link_out

Alleles: A/C

Validation:

Not Completed

Details:

Chromosome Reference Position
1 20005661

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_000871 Link_out NP_000862 Link_out 1 P [Pro] / T [Thr]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AACAGGGCCCAGTTTAATCCTGGCACTAGGGCTCAGTCTAGAATTAGGATTGAAGCTCAGTCTGTGGCTAGGATCAGGGTCAGACGG
GGGCCCTTTCTCAACGGACTCATGTGGCCTTCCTTTCCGCAGGTGCCCAGGACCCCACGCCCAGGGGTGGAGTCTGCTGACAGCAGGCGT
CTAGCCACGAAGCACAGCAGGAAGGCCCTGAAGGCCAGCCTGACGCTGGGCATCCTGCTGGGCATGTTCTTTGTGACCTGGTTGCCCTTC
TTTGTGGCCAACATAGTCCAGGTAATGCCACGGCAGGGGGCAGGTGAGTCCGGCCCTTGCAGGAGAGGCCCTGGATCCCAGCCCAGGCAT
GGGGACAGGGGAGGGTAGGCTGCCTCTCGTGGTGCGTGTGTGTGTGTGTCTGCTCCATCCATGCTGGGAAGGGTGGCCTGGGTCCCTGCC
CTGGGACCAGGCATGATGCATCCCCTCCCCCCAGGCCGTGTGCGACTGCATCTCCCCAGGCCTCTTCGATGTCCTCACATGGCTGGGTTA
CTGTAACAGCACCATGAACCCCATCATCTACCCACTCTTCATGCGGGACTTCAAGCGGGCGCTGGGCAGGTTCCTGCCATGTCCACGCTG
TCCCCGGGAGCGCCAGGCCAGCCTGGCCTCGCCATCACTGCGCACCTCTCACAGCGGCCCCCGGCCCGGCCTTAGCCTACAGCAGGTGCT
GCCGCTGCCCCTG A/C CGCCGGACTCAGATTCGGACTCAGACGCAGGCTCAGGCGGCTCCTCGGGCCTGCGGCTCACGGCCCAGCTGC
TGCTTCCTGGCGAGGCCACCCAGGACCCCCCGCTGCCCACCAGGGCCGCTGCCGCCGTCAATTTCTTCAACATCGACCCCGCGGAGCCCG
AGCTGCGGCCGCATCCACTTGGCATCCCCACGAACTGACCCGGGCTTGGGGCTGGCCAATGGGGAGCTGGATTGAGCAGAACCCAGACCC
TGAGTCCTTGGGCCAGCTCTTGGCTAAGACCAGGAGGCTGCAAGTA-3'

[Top]

RS ID: 8192530 Link_out

Alleles: G/T

Validation:

Not Completed

Details:

Chromosome Reference Position
1 19992694

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_000871 Link_out NP_000862 Link_out 1 A [Ala] / S [Ser]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TGAGTCGCGGTCTGTTCTCACGGACGGTCCCCGTCCAGCCTGCGCTTCGCCGGGGCCCTCATCTGCTTTCCCGCCACCCTATCACTC
CCTTGCCGTCCACCCTCGGTCCTCATGGTCCCAGAGCCGGGCCCAACCGCCAATAGCACCCCGGCCTGGGGGGCAGGGCCGCCGTCGGCC
CCGGGGGGCAGCGGCTGGGTGGCGGCCGCGCTGTGCGTGGTCATCGCGCTGACGGCGGCGGCCAACTCGCTGCTGATCGCGCTCATCTGC
ACTCAGCCCGCGCTGCGCAACACGTCCAACTTCTTCCTGGTGTCGCTCTTCACGTCTGACCTGATGGTGGGGCTGGTGGTGATGCCGCCG
GCCATGCTGAACGCGCTGTACGGGCGCTGGGTGCTGGCGCGCGGCCTCTGCCTGCTCTGGACCGCCTTCGACGTGATGTGCTGCAGCGCC
TCCATCCTCAACCTCTGCCTCATCAGCCTGGACCGCTACCTGCTCATCCTCTCGCCGCTGCGCTACAAGCTGCGCATGACGCCCCTGCGT
GCCCTGGCCCTAGTCCTGGGC G/T CCTGGAGCCTCGCCGCTCTCGCCTCCTTCCTGCCCCTGCTGCTGGGCTGGCACGAGCTGGGCCA
CGCACGGCCACCCGTCCCTGGCCAGTGCCGCCTGCTGGCCAGCCTGCCTTTTGTCCTTGTGGCGTCGGGCCTCACCTTCTTCCTGCCCTC
GGGTGCCATATGCTTCACCTACTGCAGGATCCTGCTAGCTGCCCGCAAGCAGGCCGTGCAGGTGGCCTCCCTCACCACCGGCATGGCCAG
TCAGGCCTCGGAGACGCTGCAGGTACCTGGGGTGCGCAGGGAGACCCGGGCTGTGGGATAGAGAGGAATGAGCAGCCCCTGGGGACCCCC
TGGGCATCCCCACTTAGCACACATTTGCTCATGGCCCTGCGTGGCTGTTGT-3'

[Top]

RS ID: 8192529 Link_out

Alleles: G/T

Validation:

  • By cluster

Details:

Chromosome Reference Position
1 19992372

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_000871 Link_out NP_000862 Link_out 3 A [Ala] / A [Ala]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TGAGTCGCGGTCTGTTCTCACGGACGGTCCCCGTCCAGCCTGCGCTTCGCCGGGGCCCTCATCTGCTTTCCCGCCACCCTATCACTC
CCTTGCCGTCCACCCTCGGTCCTCATGGTCCCAGAGCCGGGCCCAACCGCCAATAGCACCCCGGCCTGGGGGGCAGGGCCGCCGTCGGCC
CCGGGGGGCAGCGGCTGGGTGGCGGCCGCGCTGTGCGTGGTCATCGCGCTGACGGCGGC G/T GCCAACTCGCTGCTGATCGCGCTCAT
CTGCACTCAGCCCGCGCTGCGCAACACGTCCAACTTCTTCCTGGTGTCGCTCTTCACGTCTGACCTGATGGTGGGGCTGGTGGTGATGCC
GCCGGCCATGCTGAACGCGCTGTACGGGCGCTGGGTGCTGGCGCGCGGCCTCTGCCTGCTCTGGACCGCCTTCGACGTGATGTGCTGCAG
CGCCTCCATCCTCAACCTCTGCCTCATCAGCCTGGACCGCTACCTGCTCATCCTCTCGCCGCTGCGCTACAAGCTGCGCATGACGCCCCT
GCGTGCCCTGGCCCTAGTCCTGGGCGCCTGGAGCCTCGCCGCTCTCGCCTCCTTCCTGCCCCTGCTGCTGGGCTGGCACGAGCTGGGCCA
CGCACGGCCACCCGTCCCTGGCCAGTGCCGCCTGCTGGCCAGCCTGCCTTTTGTCCTTGTGGCGTCGGGCCTCACCTTCTTCCTGCCCTC
GGGTGCCATATGCTTCACCTACTGCAGGATCCTGCTAGCTGCCCGCAAGCAGGCCGTGCAGGTGGCCTCCCTCACCACCGGCATGGCCAG
TCAGGCCTCGGAGACGCTGCAGGTACCTGGGGTGCGCAGGGAGACCCGGGCTGTGGGATAGAGAGGAATGAGCAGCCCCTGGGGACCCCC
TGGGCATCCCCACTTAGCACACATTTGCTCATGGCCCTGCGTGGCTGTTGT-3'

[Top]

RS ID: 6660215 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
1 19992789

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_000871 Link_out NP_000862 Link_out 3 R [Arg] / R [Arg]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CTCAACCTCTGCCTCATCAGCCTGGACCGCTACCTGCTCATCCTCTCGCCGCTGCGCTACAAGCTGCGCATGACGCCCCTGCGTGCC
CTGGCCCTAGTCCTGGGCGCCTGGAGCCTCGCCGCTCTCGCCTCCTTCCTGCCCCTGCTGCTGGGCTGGCACGAGCTGGGCCACGCACGG
CCACCCGTCCCTGGCCAGTGCCG C/T CTGCTGGCCAGCCTGCCTTTTGTCCTTGTGGCGTCGGGCCTCACCTTCTTCCTGCCCTCGGG
TGCCATATGCTTCACCTACTGCAGGATCCTGCTAGCTGCCCGCAAGCAGGCCGTGCAGGTGGCCTCCCTCACCACCGGCATGGCCAGTCA
GGCCTCGGAGACGCTGCAGGTACCTGGGGTGCGCAGGGAGACCCGGGC-3'

[Top]

RS ID: 1805054 Link_out

Alleles: C/T

Validation:

  • By cluster
  • By frequency
  • By 2 hit 2 allele
  • By hap map

Details:

Chromosome Reference Position
1 19992513

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_000871 Link_out NP_000862 Link_out 3 Y [Tyr] / Y [Tyr]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TGAGTCGCGGTCTGTTCTCACGGACGGTCCCCGTCCAGCCTGCGCTTCGCCGGGGCCCTCATCTGCTTTCCCGCCACCCTATCACTC
CCTTGCCGTCCACCCTCGGTCCTCATGGTCCCAGAGCCGGGCCCAACCGCCAATAGCACCCCGGCCTGGGGGGCAGGGCCGCCGTCGGCC
CCGGGGGGCAGCGGCTGGGTGGCGGCCGCGCTGTGCGTGGTCATCGCGCTGACGGCGGCGGCCAACTCGCTGCTGATCGCGCTCATCTGC
ACTCAGCCCGCGCTGCGCAACACGTCCAACTTCTTCCTGGTGTCGCTCTTCACGTCTGACCTGATGGTGGGGCTGGTGGTGATGCCGCCG
GCCATGCTGAACGCGCTGTA C/T GGGCGCTGGGTGCTGGCGCGCGGCCTCTGCCTGCTCTGGACCGCCTTCGACGTGATGTGCTGCAG
CGCCTCCATCCTCAACCTCTGCCTCATCAGCCTGGACCGCTACCTGCTCATCCTCTCGCCGCTGCGCTACAAGCTGCGCATGACGCCCCT
GCGTGCCCTGGCCCTAGTCCTGGGCGCCTGGAGCCTCGCCGCTCTCGCCTCCTTCCTGCCCCTGCTGCTGGGCTGGCACGAGCTGGGCCA
CGCACGGCCACCCGTCCCTGGCCAGTGCCGCCTGCTGGCCAGCCTGCCTTTTGTCCTTGTGGCGTCGGGCCTCACCTTCTTCCTGCCCTC
GGGTGCCATATGCTTCACCTACTGCAGGATCCTGCTAGCTGCCCGCAAGCAGGCCGTGCAGGTGGCCTCCCTCACCACCGGCATGGCCAG
TCAGGCCTCGGAGACGCTGCAGGTACCTGGGGTGCGCAGGGAGACCCGGGCTGTGGGATAGAGAGGAATGAGCAGCCCCTGGGGACCCCC
TGGGCATCCCCACTTAGCACACATTTGCTCATGGCCCTGCGTGGCTGTTGT-3'

[Top]

RS ID: 6322 Link_out

Alleles: C/T

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
1 20005789

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_000871 Link_out NP_000862 Link_out 3 A [Ala] / A [Ala]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TCCTGCCATGTCCACGCTGTCCCCGGGAGCGCCAGGCCAGCCTGGCCTCGCCATCACTGCGCACCTCTCACAGCGGCCCCCGGCCCG
GCCTTAGCCTACAGCAGGTGCTGCCGCTGCCCCTGCCGCCGGACTCAGATTCGGACTCAGACGCAGGCTCAGGCGGCTCCTCGGGCCTGC
GGCTCACGGCCCAGCTGCTGCTTCCTGGCGAGGCCACCCAGGACCCCCCGCTGCCCACCAGGGCCGCTGCCGC C/T GTCAATTTCTTC
AACATCGACCCCGCGGAGCCCGAGCTGCGGCCGCATCCACTTGGCATCCCCACGAACTGACCCGGGCTTGGGGCTGGCCAATGGGGAGCT
GGATTGAGCAGAACCCAGACCCTGAGTCCTTGGGCCAGCTCTTGGCTAAGACCAGGAGGCTGCAAGTCTCCTAGAAGCCCTCTGAGCTCC
AGAGGGGTGCGCAGAGCTGACCCCCTGCTGCCATCTCCAGGCCCCTTACCTGCAGGGA-3'

[Top]

RS ID: 6321 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
1 20005834

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_000871 Link_out NP_000862 Link_out 3 P [Pro] / P [Pro]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TGCTTCCTGGCGAGGCCACCCAGGACCCCCCGCTGCCCACCAGGGCCGCTGCCGCCGTCAATTTCTTCAACATCGACCCCGCGGAGC
CCGAGCTGCGGCC A/G CATCCACTTGGCATCCCCACGAACTGACCCGGGCTTGGGGCTGGCCAATGGGGAGCTGGATTGAGCAGAACC
CAGACCCTGAGTCCTTGGGCCAGCTCTT-3'