SNPJam Report for FGA

Showing coding SNPs for FGA (Gene ID: 2243)

Show all SNPs for this gene at dbSNP

This SNP viewer is in beta and your feedback is appreciated!

This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

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RS ID: 5863109 Link_out

Alleles: -/A

Validation:

Not Completed

Details:

Chromosome Reference Position
4 155506659

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
frameshift NM_021871 Link_out NP_068657 Link_out 1 S [Ser] / F [Phe]
intron NM_000508 Link_out Not Applicable Not Applicable Not Applicable
near-gene-5 XM_001725995 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GCTAAGCATCACTTAATACTAACACAACTTGTATTTAGCCTGACCTAAATGTCAACTGAGACACATACTAAAAATGTGATTAATCAG
TTGGGTGACAATTCTAATAGCACACACTTTGAATAGTGAAAGAATTTGACTAAATAAGCTCAAATAGAGTTTCAGAGGAATTCattcatc
catttaacatgtatttattgagtcatggctctgtactgttaggcatttgggaatacagagatgagacagacaaaggccctgcccccaagg
aacttacagtctagCACAAAAACAGACCAAAAAAGTGTAGTTTCAATGACGTGTAACAGAGAGTTAAGAAGGAAATGCAAGGGGCCATGG
GAACACTGTGCAGAAATATTTAACTTAGTCTAGGGGGACAGGG -/A AAGGCTTCCCCAAAGGAGAAGTGTGGATACCTCTGACAGGGC
GAGATTTAGCATGGCCTCTCTTGGTGCTATGTGTTCCTTCATGATCGGCTTCACTTCCGGCCTCATCTGCCATTTTATAGCTCTTGCTTT
CAAATGTGGAGTCTCCTCTGTTGTAACTCGTGCTACTAGTAAATTGTTTGCTGTAACTTGAAGATTTACCACGGGAAGGGAATTCAGCTA
TCCCAGGGTGATGAGAACTGGATTCCTTTGTATTTGTGAAGATGCCAGATTCTGAGCCCCTAGACTCAGTCTCACTGACAAACTCTCCTA
ACATAGGTGAGAAGAAACCTGGGAATGTTTTTCCAGTTGAGGCAGTGTCGAAGAAGGCAGCTTCATCAGGGTGCCTATGGCGGAACCC-3
'

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RS ID: 2070033 Link_out

Alleles: C/T

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
4 155505291

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_000508 Link_out NP_000499 Link_out 3 P [Pro] / P [Pro]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CACCTCTCACAACAACATGCAGTTCAGCACCTTTGACAGGGATGCAGACCAGTGGGAAGAGAACTGTGCAGAAGTCTATGGGGGAGG
CTGGTGGTATAATAACTGCCAAGCAGCCAATCTCAATGGAATCTACTACCCTGGGGGCTCCTATGACCCAAGGAATAACAGTCCTTATGA
GATTGAGAATGGAGTGGTCTGGGTTTCCTTTAGAGGGGCAGATTATTCCCTCAGGGCTGTTCGCATGAAAATTAGGCC C/T CTTGTGA
CCCAATAGGCTGAAGAAGTGGGAATGGGAGCACTCTGTCTTCGAAGTGGGAATGGGAGCACTCTGTCTTCTTTGCTAGAGAAGTGGAGAG
AAAATACAAAAGGTAAAGCAGTTGAGATTCTCTACAACCTAAAAAATTCCTAGGTGCTATTTTCTTATCCTTTGTACTGTAGCTAAATGT
ACCTGAGACATATTAGTCTTTGAAAAATAAAGTTATGTAAGGTTTTTTTTATCTTTAAATAGCTCTGT-3'

[Top]

RS ID: 2070031 Link_out

Alleles: A/G

Validation:

  • By cluster

Details:

Chromosome Reference Position
4 155507215

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense XM_001725995 Link_out XP_001726047 Link_out 2 V [Val] / A [Ala]
missense NM_000508 Link_out NP_000499 Link_out 1 T [Thr] / A [Ala]
missense NM_021871 Link_out NP_068657 Link_out 1 T [Thr] / A [Ala]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GGGCACTGGACCTCTGAGAGCTCTGTATCTGGTAGTACTGGACAATGGCACTCTGAATCTGGAAGTTTTAGGCCAGATAGCCCAGGC
TCTGGGAACGCGAGGCCTAACAACCCAGACTGGGGCACATTTGAAGAGGTGTCAGGAAATGTAAGTCCAGGGACAAGGAGAGAGTACCAC
ACAGAAAAACTGGTCACTTCTAAAGGAGATAAAGAGCTCAGGACTGGTAAAGAGAAGGTCACCTCTGGTAGCACAACC A/G CCACGCG
TCGTTCATGCTCTAAAACCGTTACTAAGACTGTTATTGGTCCTGATGGTCACAAAGAAGTTACCAAAGAAGTGGTGACCTCCGAAGATGG
TTCTGACTGTCCCGAGGCAATGGATTTAGGCACATTGTCTGGCATAGGTACTCTGGATGGGTTCCGCCATAGGCACCCTGATGAAGCTGC
CTTCTTCGACACTGCCTCAACTGGAAAAACATTCCCAGGTTTCTTCTCACCTATGTTAGGAGAGTTTG-3'

[Top]

RS ID: 2070025 Link_out

Alleles: A/G

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
4 155511824

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_000508 Link_out NP_000499 Link_out 1 I [Ile] / V [Val]
missense NM_021871 Link_out NP_068657 Link_out 1 I [Ile] / V [Val]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CTGCATAAAGTGAAATATTGTTTGCTAAATCACTACTACTGGGGGCTACAGCTAGCTTACCTAAGCACCTTCTATATTCTTTCACGT
TTAGAAATATGGATATACCCTCCTATGCTCCTCTTTTCATTCTCAAAGCCACCCTGTTCCTGGAATGTGAGATCTCCTAATTGTTGACTG
GAGAATCAAATGCTACCTTTGCAACAGCTTATCGGAAGCAAACAAGCTGAGGGGAATTGAGCAAGAATTTCTGGGATACCAACAGCATAG
GAGGAACAAAGGACGTAGAGGGAGGGTTGACTGTCTACACAGGACAAAGCCAATGATTAACCAAACCTCTTGCAGATTTAAATAGGATGG
GAACTAGGAGTGGCRGCAATCCTTTCTTTCAGCTGGAGTGCTCCTCAGGAGCCAGCCCCACCCTTAGAAAAGATGTTTTCCATGAGG A/
G TCGTCTGCCTGGTCCTAAGTGTGGTGGGCACAGCATGGGTATGGCCCTTTTCATTTTTTCTTCTTGCTTTCTCTCTGGTGTTTATTCC
A-3'

[Top]

RS ID: 10921 Link_out

Alleles: A/T

Validation:

  • By hap map

Details:

Chromosome Reference Position
4 155507405

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense XM_001725995 Link_out XP_001726047 Link_out 3 K [Lys] / N [Asn]
missense NM_000508 Link_out NP_000499 Link_out 3 S [Ser] / R [Arg]
missense NM_021871 Link_out NP_068657 Link_out 3 S [Ser] / R [Arg]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CCTGGAATCCTGGCAGCTCTGAACGCGGAAGTGCTGGGCACTGGACCTCTGAGAGCTCTGTATCTGGTAGTACTGGACAATGGCACT
CTGAATCTGGAAG A/T TTTAGGCCAGATAGCCCAGGCTCTGGGAACGCGAGGCCTAACAACCCAGACTGGGGCACATTTGAAGAGGTG
TCAGGAAATGTAAGTCCAGGGACAAGGA-3'

[Top]

RS ID: 6052 Link_out

Alleles: A/G

Validation:

  • By hap map
  • By cluster

Details:

Chromosome Reference Position
4 155507245

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense XM_001725995 Link_out XP_001726047 Link_out 2 L [Leu] / S [Ser]
missense NM_000508 Link_out NP_000499 Link_out 1 K [Lys] / E [Glu]
missense NM_021871 Link_out NP_068657 Link_out 1 K [Lys] / E [Glu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ATTTGAAGAGGTGTCAGGAAATGTAAGTCCAGGGACAAGGAGAGAGTACCACACAGAAAAACTGGTCACTTCTAAAGGAGATAAAGA
GCTCAGGACTGGT A/G AAGAGAAGGTCACCTCTGGTAGCACAACCACCACGCGTCGTTCATGCTCTAAAACCGTTACTAAGACTGTTA
TTGGTCCTGATGGTCACAAAGAAGTTAC-3'

[Top]

RS ID: 6051 Link_out

Alleles: C/T

Validation:

  • By frequency

Details:

Chromosome Reference Position
4 155507510

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous XM_001725995 Link_out XP_001726047 Link_out 3 P [Pro] / P [Pro]
coding-synonymous NM_000508 Link_out NP_000499 Link_out 3 T [Thr] / T [Thr]
coding-synonymous NM_021871 Link_out NP_068657 Link_out 3 T [Thr] / T [Thr]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GGAGCTCTGGACCTGGAAGTACTGGAAGCTGGAACTCTGGGAGCTCTGGAACTGGAAGTACTGGAAACCAAAACCCTGGGAGCCCTA
GACCTGGTAGTAC C/T GGAACCTGGAATCCTGGCAGCTCTGAACGCGGAAGTGCTGGGCACTGGACCTCTGAGAGCTCTGTATCTGGT
AGTACTGGACAATGGCACTCTGAATCTG-3'

[Top]

RS ID: 6050 Link_out

Alleles: A/G

Validation:

  • By cluster
  • By frequency
  • By 2 hit 2 allele
  • By hap map

Details:

Chromosome Reference Position
4 155507590

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense XM_001725995 Link_out XP_001726047 Link_out 2 V [Val] / G [Gly]
missense NM_000508 Link_out NP_000499 Link_out 1 T [Thr] / S [Ser]
missense NM_021871 Link_out NP_068657 Link_out 1 T [Thr] / S [Ser]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GACTTGGTTCCCGGAAATTTTAAGAGCCAGCTTCAGAAGGTACCCCCAGAGTGGAAGGCATTAACAGACATGCCGCAGATGAGAATG
GAGTTAGAGAGACCTGGTGGAAATGAGATTACTCGAGGAGGCTCCACCTCTTATGGAACCGGATCAGAGACGGAAAGCCCCAGGAACCCT
AGCAGTGCTGGAAGCTGGAACTCTGGGAGCTCTGGACCTGGAAGTACTGGAAACCGAAACCCTGGGAGCTCTGGGACTGGAGGGACTGCA
ACCTGGAAACCTGGGAGCTCTGGACCTGGAAGT A/G CTGGAAGCTGGAACTCTGGGAGCTCTGGAACTGGAAGTACTGGAAACCAAAA
CCCTGGGAGCCCTAGACCTGGTAGTACCGGAACCTGGAATCCTGGCAGCTCTGAACGCGGAAGTGCTGGGCACTGGACCTCTGAGAGCTC
TGTATCTGGTAGTACTGGACAATGGCACTCTGAATCTGGAAGTTTTAGGCCAGATAGCCCAGGCTCTGGGAACGCGAGGCCTAACAACCC
AGACTGGGGCACATTTGAAGAGGTGTCAGGAAATGTAAGTCCAGGGACAAGGAGAGAGTACCACACAG-3'

[Top]

RS ID: 4766 Link_out

Alleles: C/T

Validation:

  • By frequency
  • By cluster

Details:

Chromosome Reference Position
4 155507039

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_000508 Link_out NP_000499 Link_out 3 P [Pro] / P [Pro]
coding-synonymous NM_021871 Link_out NP_068657 Link_out 3 P [Pro] / P [Pro]
intron XM_001725995 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AAAAACTGGTCACTTCTAAAGGAGATAAAGAGCTCAGGACTGGTAAAGAGAAGGTCACCTCTGGTAGCACAACCACCACGCGTCGTT
CATGCTCTAAAACCGTTACTAAGACTGTTATTGGTCCTGATGGTCACAAAGAAGTTACCAAAGAAGTGGTGACCTCCGAAGATGGTTCTG
ACTGTCCCGAGGCAATGGATTTAGGCACATTGTCTGGCATAGGTACTCTGGATGGGTTCCGCCATAGGCACCC C/T GATGAAGCTGCC
TTCTTCGACACTGCCTCAACTGGAAAAACATTCCCAGGTTTCTTCTCACCTATGTTAGGAGAGTTTGTCAGTGAGACTGAGTCTAGGGGC
TCAGAATCTGGCATCTTCACAAATACAAAGGAATCCAGTTCTCATCACCCTGGGATAGCTGAATTCCCTTCCCGTGGTAAATCTTCAAGT
TACAGCAAACAATTTACTAGTAGCACGAGTTACAACAGAGGAGACTCCACATTTGAAA-3'