Showing coding SNPs for CTSD (Gene ID: 1509)
Show all SNPs for this gene at dbSNP
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This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.
Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.
RS ID:
117301951
Alleles: A/G
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1780753 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | NM_001909 ![]() |
NP_001900 ![]() |
3 | I [Ile] / I [Ile] |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
1 | D [Asp] / N [Asn] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
116153088
Alleles: A/C
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1778725 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| intron | XM_002343068 ![]() |
Not Applicable | Not Applicable | Not Applicable |
| missense | NM_001909 ![]() |
NP_001900 ![]() |
2 | V [Val] / G [Gly] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
115786275
Alleles: C/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1778371 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
2 | P [Pro] / L [Leu] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
115127652
Alleles: A/G
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1778094 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | XM_002343068 ![]() |
XP_002343109 ![]() |
3 | G [Gly] / G [Gly] |
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
114444849
Alleles: C/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1779268 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | XM_002343068 ![]() |
XP_002343109 ![]() |
3 | H [His] / H [His] |
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
114112241
Alleles: A/C
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1778147 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
2 | T [Thr] / N [Asn] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
114051835
Alleles: A/G
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1782578 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | NM_001909 ![]() |
NP_001900 ![]() |
3 | T [Thr] / T [Thr] |
| coding-synonymous | XM_002343068 ![]() |
XP_002343109 ![]() |
3 | S [Ser] / S [Ser] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
113831578
Alleles: C/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1779764 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | XM_002343068 ![]() |
XP_002343109 ![]() |
1 | L [Leu] / L [Leu] |
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
113641298
Alleles: A/G
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1776114 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
1 | A [Ala] / T [Thr] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
113444155
Alleles: A/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1778552 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | XM_002343068 ![]() |
XP_002343109 ![]() |
3 | P [Pro] / P [Pro] |
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
113137893
Alleles: A/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1777958 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
2 | K [Lys] / M [Met] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
112021026
Alleles: C/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1775350 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | NM_001909 ![]() |
NP_001900 ![]() |
3 | G [Gly] / G [Gly] |
| intron | XM_002343068 ![]() |
Not Applicable | Not Applicable | Not Applicable |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
111965770
Alleles: C/G
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1780870 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
1 | L [Leu] / V [Val] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
111849172
Alleles: C/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1775081 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | NM_001909 ![]() |
NP_001900 ![]() |
3 | K [Lys] / K [Lys] |
| intron | XM_002343068 ![]() |
Not Applicable | Not Applicable | Not Applicable |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
111444735
Alleles: A/G
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1776095 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | XM_002343068 ![]() |
XP_002343109 ![]() |
3 | P [Pro] / P [Pro] |
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
80342185
Alleles: A/G
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1778079 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | XM_002343068 ![]() |
XP_002343109 ![]() |
3 | S [Ser] / S [Ser] |
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
78306946
Alleles: A/G
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1775245 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | NM_001909 ![]() |
NP_001900 ![]() |
3 | A [Ala] / A [Ala] |
| intron | XM_002343068 ![]() |
Not Applicable | Not Applicable | Not Applicable |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
71812486
Alleles: (LARGEDELETION)/-
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1780870 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
1 | LAGDRF / AGDRF |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
61869049
Alleles: C/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1777969 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
1 | R [Arg] / W [Trp] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
55877559
Alleles: A/G
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1778176 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
1 | G [Gly] / R [Arg] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
55797351
Alleles: A/G
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1778104 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
1 | A [Ala] / T [Thr] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
35855065
Alleles: -/G
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1782617 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| frameshift | NM_001909 ![]() |
NP_001900 ![]() |
2 | G [Gly] / A [Ala] |
| frameshift | XM_002343068 ![]() |
XP_002343109 ![]() |
3 | G [Gly] / G [Gly] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
35640004
Alleles: A/C
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1779768 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
2 | P [Pro] / Q [Gln] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
12786025
Alleles: C/T
Validation:
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1778091 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | XM_002343068 ![]() |
XP_002343109 ![]() |
3 | A [Ala] / A [Ala] |
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
11555048
Alleles: G/T
Validation:
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1780847 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| missense | NM_001909 ![]() |
NP_001900 ![]() |
2 | G [Gly] / V [Val] |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
2 | A [Ala] / D [Asp] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
11555047
Alleles: C/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1780870 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | NM_001909 ![]() |
NP_001900 ![]() |
3 | D [Asp] / D [Asp] |
| frameshift | XM_002343068 ![]() |
XP_002343109 ![]() |
1 | LAGDRF / V [Val] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
11555046
Alleles: A/C
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1785060 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | NM_001909 ![]() |
NP_001900 ![]() |
3 | A [Ala] / A [Ala] |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
3 | R [Arg] / S [Ser] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
11555045
Alleles: G/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1778721 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| intron | XM_002343068 ![]() |
Not Applicable | Not Applicable | Not Applicable |
| missense | NM_001909 ![]() |
NP_001900 ![]() |
3 | F [Phe] / L [Leu] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
11555044
Alleles: C/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1782564 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| missense | NM_001909 ![]() |
NP_001900 ![]() |
2 | P [Pro] / L [Leu] |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
1 | G [Gly] / R [Arg] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
11555043
Alleles: C/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1780263 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| intron | XM_002343068 ![]() |
Not Applicable | Not Applicable | Not Applicable |
| missense | NM_001909 ![]() |
NP_001900 ![]() |
2 | T [Thr] / I [Ile] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
11555042
Alleles: A/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1780806 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | XM_002343068 ![]() |
XP_002343109 ![]() |
3 | R [Arg] / R [Arg] |
| missense | NM_001909 ![]() |
NP_001900 ![]() |
1 | T [Thr] / S [Ser] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
11555040
Alleles: C/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1774790 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | NM_001909 ![]() |
NP_001900 ![]() |
3 | Y [Tyr] / Y [Tyr] |
| intron | XM_002343068 ![]() |
Not Applicable | Not Applicable | Not Applicable |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
11555039
Alleles: C/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1780205 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | NM_001909 ![]() |
NP_001900 ![]() |
3 | T [Thr] / T [Thr] |
| intron | XM_002343068 ![]() |
Not Applicable | Not Applicable | Not Applicable |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
2292962
Alleles: A/G
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1778321 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | XM_002343068 ![]() |
XP_002343109 ![]() |
3 | P [Pro] / P [Pro] |
| intron | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
2230067
Alleles: C/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1780867 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | NM_001909 ![]() |
NP_001900 ![]() |
3 | A [Ala] / A [Ala] |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
1 | G [Gly] / S [Ser] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
1320294
Alleles: C/T
Validation:
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1778673 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| coding-synonymous | NM_001909 ![]() |
NP_001900 ![]() |
3 | F [Phe] / F [Phe] |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
1 | E [Glu] / K [Lys] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
698451
Alleles: A/G
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1774219 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
2 | S [Ser] / F [Phe] |
| utr-3 | NM_001909 ![]() |
Not Applicable | Not Applicable | Not Applicable |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence:
RS ID:
17571
Alleles: C/T
Validation:
Not Completed
Details:
| Chromosome | Reference Position |
|---|---|
| 11 | 1782594 |
| Function Class | mRNA Accession | Protein Accession | Reading Frame | Amino Acids |
|---|---|---|---|---|
| missense | NM_001909 ![]() |
NP_001900 ![]() |
2 | A [Ala] / V [Val] |
| missense | XM_002343068 ![]() |
XP_002343109 ![]() |
1 | A [Ala] / T [Thr] |
Source: dbSNP
Population Frequencies:
Not Completed
Sequence: