SNPJam Report for CAST

Showing coding SNPs for CAST (Gene ID: 831)

Show all SNPs for this gene at dbSNP

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This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

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RS ID: 754615 Link_out

Alleles: C/G

Validation:

  • By frequency
  • By 2 hit 2 allele
  • By cluster

Details:

Chromosome Reference Position
5 96086334

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_173063 Link_out NP_775086 Link_out 2 C [Cys] / S [Ser]
missense NM_001042440 Link_out NP_001035905 Link_out 2 C [Cys] / S [Ser]
missense NM_001042441 Link_out NP_001035906 Link_out 2 C [Cys] / S [Ser]
missense NM_001042442 Link_out NP_001035907 Link_out 2 C [Cys] / S [Ser]
missense NM_001750 Link_out NP_001741 Link_out 2 C [Cys] / S [Ser]
missense NM_001042443 Link_out NP_001035908 Link_out 2 C [Cys] / S [Ser]
missense NM_001042444 Link_out NP_001035909 Link_out 2 C [Cys] / S [Ser]
missense NM_001042445 Link_out NP_001035910 Link_out 2 C [Cys] / S [Ser]
missense NM_173060 Link_out NP_775083 Link_out 2 C [Cys] / S [Ser]
missense NM_001042446 Link_out NP_001035911 Link_out 2 C [Cys] / S [Ser]
missense NM_173061 Link_out NP_775084 Link_out 2 C [Cys] / S [Ser]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TGAAGAGTTTTAGCATGCTTTGACTTATTTACTATTTAGCAATCCTTAGGTATTCAAGAGAATCATGTTCACACCATATAATGTAGC
GGAGTGTCTTGTTGGTCTACCATTACTCAGTCTTATTAACCAAATATTTCTAAACTTATTGAGAGTACTTGTGTCTTTCCTCAGGAATCT
AAGGCCGCTGCTCCAGCTCCTGTGTCGGAGGCTGTGT C/G TCGGACCTCCATGTGTAGTATACAGTCAGCACCCCCTGAGCCGGCTAC
CTTGGTGAGTGACTCCCTGGGCATTTGAGCAGTGGCTTGAGAAAGTTTTCTGCCTCCTCCTGTCACTCTCTGCTGTGTATTACCATCATT
TTATCTTATCCTGACAAATTAAAAATAAAATCTGATATCATTATAGTATCTGTTGTTTCTTTGGGCTTCAGGGGTGTCGTAGAAATTCAG
ACTAAGatttaaatttttaattaaattaCTCCCAACTGTATTTTTCTCTACTCTTCTGAAATTCTAGTTCCTCAGCTATTGTGGATAATC
CTGCCTTTTCACTTCTCTGCATCTTTTAAGCCTATATAGATTTCCACCGAAAGCCCAAAGTTACTTTTTTACTGACTTTCCTGGTAGAAT
AACATGCAGTAAAATCATTATGATTCCTCCCACTCTTCCCACTGCAGAAGGTGAAACTGACTCAATTTCTTTCTCTTTCCTTCTTCTTTT
CGGGCTTCTCTCTCACTTTCTAATTTTCACATGAAGTATGATATTTAAGAAGGTGATCTTTGTTTCCTTTTGATTTAGTGTTTTTTTTCA
TTAGTA-3'

[Top]

RS ID: 26506 Link_out

Alleles: C/T

Validation:

  • By cluster
  • By frequency
  • By submitter
  • By 2 hit 2 allele

Details:

Chromosome Reference Position
5 96079402

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_173061 Link_out NP_775084 Link_out 3 D [Asp] / D [Asp]
intron NM_173063 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042440 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042441 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042442 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001750 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042443 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042444 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042445 Link_out Not Applicable Not Applicable Not Applicable
intron NM_173060 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042446 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GGAGAGAGTTGCCGGTTCCTGACAAGGCAGTGTTGTGGGGAGATGGAAAGGTAGCCTGGGATCCCCAGGAGCCCGCCCCACCTCCAT
CAGCTCAGGCTGGGGGTGCTGGCAGGCATTGCTGTCACAATGCCCCATCTCTGCTGTCACTTCCTGTTCTGAGTCATCAGGGAAGGGGAG
TCTCCCTGACTTCCAGCAACAATCCTTGAGTCTGGGACTGCCCTGGCCTAAGATGGGCCAGTTTCTATCTTCGACTTTCTTGGAGGGCTC
ACCGGCCACAGTGTGGCACGATAAGCTTTGTGA C/T GGTGAACGCAGAGGAGCAAGAGAAGCAGTTCGTATCTTCCAGGACCAAGTAA
TGTATTGGGAAGAAGGGAAACTTGATTACAACACAATGTGAGATATACATTACTTAGAGTAGCCGACAGAAGCAGTGTCATCTTGAGGAA
AGCGGGGTGTTGGCAGAATCCTGGGGGGAGTCAGGAGGCCAAGCTGAGTTGTGGCTTTACCACCTGAGGGCGACAGGGCCACAAGTATAT
TGCACTTCTGCCCCAAGCTTCTTACAGACACTTAAGGAGAGACAATTAATGTGGGAAGGGAGGGTATA-3'

[Top]

RS ID: 26505 Link_out

Alleles: C/T

Validation:

  • By cluster
  • By frequency
  • By submitter
  • By 2 hit 2 allele

Details:

Chromosome Reference Position
5 96079387

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_173061 Link_out NP_775084 Link_out 3 H [His] / H [His]
intron NM_173063 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042440 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042441 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001750 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042442 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042443 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042444 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042445 Link_out Not Applicable Not Applicable Not Applicable
intron NM_173060 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042446 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TGGGGAGATGGAAAGGTAGCCTGGGATCCCCAGGAGCCCGCCCCACCTCCATCAGCTCAGGCTGGGGGTGCTGGCAGGCATTGCTGT
CACAATGCCCCATCTCTGCTGTCACTTCCTGTTCTGAGTCATCAGGGAAGGGGAGTCTCCCTGACTTCCAGCAACAATCCTTGAGTCTGG
GACTGCCCTGGCCTAAGATGGGCCAGTTTCTATCTTCGACTTTCTTGGAGGGCTCACCGGCCACAGTGTGGCA C/T GATAAGCTTTGT
GACGGTGAACGCAGAGGAGCAAGAGAAGCAGTTCGTATCTTCCAGGACCAAGTAATGTATTGGGAAGAAGGGAAACTTGATTACAACACA
ATGTGAGATATACATTACTTAGAGTAGCCGACAGAAGCAGTGTCATCTTGAGGAAAGCGGGGTGTTGGCAGAATCCTGGGGGGAGTCAGG
AGGCCAAGCTGAGTTGTGGCTTTACCACCTGAGGGCGACAGGGCCACAAGTATATTGC-3'

[Top]

RS ID: 10835 Link_out

Alleles: G/T

Validation:

Not Completed

Details:

Chromosome Reference Position
5 96064865

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_173063 Link_out NP_775086 Link_out 3 V [Val] / V [Val]
coding-synonymous NM_001042442 Link_out NP_001035907 Link_out 3 V [Val] / V [Val]
coding-synonymous NM_001750 Link_out NP_001741 Link_out 3 V [Val] / V [Val]
coding-synonymous NM_001042443 Link_out NP_001035908 Link_out 3 V [Val] / V [Val]
coding-synonymous NM_001042445 Link_out NP_001035910 Link_out 3 V [Val] / V [Val]
coding-synonymous NM_173060 Link_out NP_775083 Link_out 3 V [Val] / V [Val]
intron NM_001042440 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042441 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042444 Link_out Not Applicable Not Applicable Not Applicable
intron NM_001042446 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AGATGAGAAAAAAGCAGCAAGCCTCGGCAGCAGTCAATCCTCCAGAACCTATGCTGGTGGAACAGCCTCGGCCACCAAGGTGTCAGC
TTCCTCTGGTGCAACCAGCAAGTCTTCCAGTATGAATCCCACAGAAACCAAGGCCATTCCAGTCAGCCAACAGATGGAAGGACCACATCT
TCCTAACAAGAAAAAACACAAAAAACAGGCTGTAAAAACAGAACCTGAGAAGAAGTCACAGTCAACCAAGCTGTCTGT G/T GTTCATG
AGAAAAAATCCCAAGAAGGAAAGCCAAAAGAACACACAGAGCCAAAAAGCCTACCCAAGCAGGCATCAGATACAGGAAGTAACGATGCTC
ACAATAAAAAAGCAGTTTCCAGATCAGCTGAACAGCAGCCATCAGAGAAATCAACAGAACCAAAGACTAAACCACAAGACATGATTTCTG
CTGGTGGAGAGAGTGTTGCTGGTATCACTGCAATATCTGGCAAGCCGGGTGACAAGAAAAAAGAAAAG-3'

[Top]

RS ID: 9667 Link_out

Alleles: A/G

Validation:

  • By frequency
  • By 2 hit 2 allele
  • By cluster

Details:

Chromosome Reference Position
5 96031569

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_173063 Link_out NP_775086 Link_out 3 Q [Gln] / Q [Gln]
coding-synonymous NM_001042440 Link_out NP_001035905 Link_out 3 Q [Gln] / Q [Gln]
coding-synonymous NM_001042441 Link_out NP_001035906 Link_out 3 Q [Gln] / Q [Gln]
coding-synonymous NM_001750 Link_out NP_001741 Link_out 3 Q [Gln] / Q [Gln]
coding-synonymous NM_001042442 Link_out NP_001035907 Link_out 3 Q [Gln] / Q [Gln]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ATTGAACAATTGAGACTTATTCAACTTACTCTTCATTTCAATATTTGTATCATCTTCAGGCAAAGTAACGAAAAATTCAAAGCATAT
GTTTACTTTGGGTGTGTTTCAAATATTAGTCTGATTTTTGCTTGAGAAAATATTTGTATTGATATGTAAGTTTGCATTTGACTACATTGG
TAAGGTGTTTTCCCCCATTGAAACTAATATTTTCTATTTTCAAGAAAAAAGCAGCAAGCCTCGGCAGCAGTCA A/G TCCTCCAGAACC
TATGCTGGTGGAACAGCCTCGGCCACCAAGGTCAGTGATTTCCTGAACACGAAAAGACCCCTACTGTATTCTACAGGGATATGATTAGTG
GGTGGGGCCTGTAGGAATGGCAAACAGTGTCCAGATATCACTGAAGGTTTTTTAACAAAGTATCATTTCTGTGCTAGAAGAGAGAATATA
ATTTCTTAATAATGATGTGAATGATTTAAAACCTAGTAAAACCATTTATTGTATAAAT-3'

[Top]

RS ID: 4948 Link_out

Alleles: C/T

Validation:

  • By frequency
  • By 2 hit 2 allele
  • By cluster

Details:

Chromosome Reference Position
5 96098003

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_173061 Link_out NP_775084 Link_out 2 A [Ala] / V [Val]
missense NM_173063 Link_out NP_775086 Link_out 2 A [Ala] / V [Val]
missense NM_001042440 Link_out NP_001035905 Link_out 2 A [Ala] / V [Val]
missense NM_001042441 Link_out NP_001035906 Link_out 2 A [Ala] / V [Val]
missense NM_001042442 Link_out NP_001035907 Link_out 2 A [Ala] / V [Val]
missense NM_001750 Link_out NP_001741 Link_out 2 A [Ala] / V [Val]
missense NM_001042443 Link_out NP_001035908 Link_out 2 A [Ala] / V [Val]
missense NM_001042444 Link_out NP_001035909 Link_out 2 A [Ala] / V [Val]
missense NM_001042445 Link_out NP_001035910 Link_out 2 A [Ala] / V [Val]
missense NM_001042446 Link_out NP_001035911 Link_out 2 A [Ala] / V [Val]
missense NM_173060 Link_out NP_775083 Link_out 2 A [Ala] / V [Val]
utr-3 NM_016442 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-AACCTGTGATGGATAAAGTCAAGGAGAAGGCCAAAGAAGAAGACCGTGAAAAGCTTGGTGAAAAAGAAGAAACAATTCCTCCTGATT
ATAGATTAGAAGAGGTCAAGGATAAAGATGGAAAGCCACTCCTGCCAAAAGAGTCTAAGGAACAGCTTCCACCCATGAGTGAAGACTTCC
TTCTGGATGCTTTGTCTGAGGACTTCTCTGGTCCACAAAATGCTTCATCTCTTAAATTTGAAGATGCTAAACTTGCTG C/T TGCCATC
TCTGAAGTGGTTTCCCAAACCCCAGCTTCAACGACCCAAGCTGGAGCCCCACCCCGTGATACCTCGCAGAGTGACAAAGACCTCGATGAT
GCCTTGGATAAACTCTCTGACAGTCTAGGACAAAGGCAGCCTGACCCAGATGAGAACAAACCAATGGAAGATAAAGTAAAGGAAAAAGCT
AAAGCTGAACATAGAGACAAGCTTGGAGAAAGAGATGACACTATCCCACCTGAATACAGACATCTCCT-3'