SNPJam Report for CASP1

Showing coding SNPs for CASP1 (Gene ID: 834)

Show all SNPs for this gene at dbSNP

This SNP viewer is in beta and your feedback is appreciated!

This SNPJam view is a snapshot of the information available at dbSNP and HapMap. It has been reformated to include the information most relevant to drug and metabolomics research.

Please note that population frequency data is updated on a nightly basis and may not be present if this gene was recently annotated.

Show all non-coding SNPs

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RS ID: 3737531 Link_out

Alleles: C/T

Validation:

  • By cluster

Details:

Chromosome Reference Position
11 104899969

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_001223 Link_out NP_001214 Link_out 3 K [Lys] / K [Lys]
coding-synonymous NM_033292 Link_out NP_150634 Link_out 3 K [Lys] / K [Lys]
coding-synonymous NM_033293 Link_out NP_150635 Link_out 3 K [Lys] / K [Lys]
intron NM_033294 Link_out Not Applicable Not Applicable Not Applicable
intron NM_033295 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ATCATCCTCAAACTCTTCTGTAGTTGGTAAAGATAGGTTTCCAGAAACTCCTACTGAATC C/T TTAAACCACACCACACCAGGGC
TGTCTGGAAAGACACAGTTTGATTTGTTACTACTACCA-3'

[Top]

RS ID: 3203616 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
11 104901935

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
intron NM_033295 Link_out Not Applicable Not Applicable Not Applicable
missense NM_033294 Link_out NP_150636 Link_out 2 S [Ser] / F [Phe]
missense NM_001223 Link_out NP_001214 Link_out 2 S [Ser] / F [Phe]
missense NM_033292 Link_out NP_150634 Link_out 2 S [Ser] / F [Phe]
missense NM_033293 Link_out NP_150635 Link_out 2 S [Ser] / F [Phe]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CCCAGCTATGCCCACATCCTCAGGCTCAGAAGGGAATGTCAAGCTTTGCT C/T CCTAGAAGAAGCTCAAAGGATATGGAAACAAA
AGTCGGCAGAGATTTATC-3'

[Top]

RS ID: 3203615 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
11 104901960

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
intron NM_033295 Link_out Not Applicable Not Applicable Not Applicable
missense NM_033294 Link_out NP_150636 Link_out 1 S [Ser] / P [Pro]
missense NM_001223 Link_out NP_001214 Link_out 1 S [Ser] / P [Pro]
missense NM_033292 Link_out NP_150634 Link_out 1 S [Ser] / P [Pro]
missense NM_033293 Link_out NP_150635 Link_out 1 S [Ser] / P [Pro]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CAGCTCCTCAGGCAGTGCAGGACAACCCAGCTATGCCCACATCCTCAGGC C/T CAGAAGGGAATGTCAAGCTTTGCTCCCTAGAA
GAAGCTCAAAGGATATGG-3'

[Top]

RS ID: 3203614 Link_out

Alleles: A/G

Validation:

Not Completed

Details:

Chromosome Reference Position
11 104901963

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
intron NM_033295 Link_out Not Applicable Not Applicable Not Applicable
missense NM_033294 Link_out NP_150636 Link_out 1 G [Gly] / S [Ser]
missense NM_001223 Link_out NP_001214 Link_out 1 G [Gly] / S [Ser]
missense NM_033292 Link_out NP_150634 Link_out 1 G [Gly] / S [Ser]
missense NM_033293 Link_out NP_150635 Link_out 1 G [Gly] / S [Ser]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ACCTGGAAATTAGCTTAGTACACAAGACTCCCAATTACTATTTTCTTCCTTCCCAGCTCCTCAGGCAGTGCAGGACAACCCAGCTAT
GCCCACATCCTCA A/G GCTCAGAAGGGAATGTCAAGCTTTGCTCCCTAGAAGAAGCTCAAAGGATATGGAAACAAAAGTCGGCAGAGA
TTTATCCAATAATGGACAAGTCAAGCCG-3'

[Top]

RS ID: 3016805 Link_out

Alleles: A/T

Validation:

  • By hap map

Details:

Chromosome Reference Position
11 104905174

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_033294 Link_out NP_150636 Link_out 2 L [Leu] / Q [Gln]
missense NM_033295 Link_out NP_150637 Link_out 2 L [Leu] / Q [Gln]
missense NM_001223 Link_out NP_001214 Link_out 2 L [Leu] / Q [Gln]
missense NM_033292 Link_out NP_150634 Link_out 2 L [Leu] / Q [Gln]
missense NM_033293 Link_out NP_150635 Link_out 2 L [Leu] / Q [Gln]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-CTTCACAAATGTATGTGATGCAAATTTGGCATGCCTGTGCCCCTTTCGGAATAACGGAGTCAATCAAAGCTCGGGTCTTATCCATAA
CTGTAGCATTTTCACGTTTTACTTTCTCCATCTCTTCCTTGTTCAGCACCCTTGTCTGTAATAATTCATCCAGTAAGCCATTTATTGTAC
CTTCACCCATGGAACGGATAAAC A/T GCTTTCTCTTCTCCTTCAGGACCTTGTCTGTTTAGAGCACAAGGATTTCTCACATCATGAAA
ACAGCCTCATATTCCTCTCATGTAATCAACAGAAAGTGACCTCATTTAGATTTCATCAGTGAAATGTCCCCCTCCTCACAGTTGGGTAAT
CCCTCTTCTTACTGTATTGCTGTCCTACTTGTTTCCCTCAATAGTCTC-3'

[Top]

RS ID: 2509649 Link_out

Alleles: C/T

Validation:

Not Completed

Details:

Chromosome Reference Position
11 104904955

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
intron NM_033294 Link_out Not Applicable Not Applicable Not Applicable
intron NM_033295 Link_out Not Applicable Not Applicable Not Applicable
intron NM_033293 Link_out Not Applicable Not Applicable Not Applicable
missense NM_001223 Link_out NP_001214 Link_out 2 G [Gly] / E [Glu]
missense NM_033292 Link_out NP_150634 Link_out 2 G [Gly] / E [Glu]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TTAAGGAAAAGAATCAAAGGAGAGTCAAGGGACATGCAATAGGGACCCTGCTACAGAAATATGGCCCTGAAGCCAGAAATAAGAAAG
TTTTCTTCCAATTAACATGACTAGTAAAGAAATCAAATGTTAGGCACGAAGACAGGCCCTAGGTGAACTTGAGTGTAAGTCACTGACCCT
TACCTGCTGAGAGTCCCAGCGTC C/T CTGCCAGGTAACTGTCTTCTTCACAAATGTATGTGATGCAAATTTGGCATGCCTGTGCCCCT
TTCGGAATAACGGAGTCAATCAAAGCTCGGGTCTTATCCATAACTGTAGCATTTTCACGTTTTACTTTCTCCATCTCTTCCTTGTTCAGC
ACCCTTGTCTGTAATAATTCATCCAGTAAGCCATTTATTGTACCTTCA-3'

[Top]

RS ID: 1042743 Link_out

Alleles: A/G

Validation:

  • By cluster
  • By frequency
  • By 2 hit 2 allele
  • By hap map

Details:

Chromosome Reference Position
11 104905165

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
missense NM_033294 Link_out NP_150636 Link_out 2 R [Arg] / H [His]
missense NM_033295 Link_out NP_150637 Link_out 2 R [Arg] / H [His]
missense NM_001223 Link_out NP_001214 Link_out 2 R [Arg] / H [His]
missense NM_033292 Link_out NP_150634 Link_out 2 R [Arg] / H [His]
missense NM_033293 Link_out NP_150635 Link_out 2 R [Arg] / H [His]

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-GAGGGAAACAAGTAGGACAGCAATACAGTAAGAAGAGGGATTACCCAACTGTGAGGAGGGGGACATTTCACTGATGAAATCTAAATG
AGGTCACTTTCTGTTGATTACATGAGAGGAATATGAGGCTGTTTTCATGATGTGAGAAATCCTTGTGCTCTAAACAGACAAGGTCCTGAA
GGAGAAGAGAAAGCTGTTTATCC A/G TTCCATGGGTGAAGGTACAATAAATGGCTTACTGGATGAATTATTACAGACAAGGGTGCTGA
ACAAGGAAGAGATGGAGAAAGTAAAACGTGAAAATGCTACAGTTATGGATAAGACCCGAGCTTTGATTGACTCCGTTATTCCGAAAGGGG
CACAGGCATGCCAAATTTGCATCACATACATTTGTGAAGAAGACAGTT-3'

[Top]

RS ID: 580253 Link_out

Alleles: C/T

Validation:

  • By cluster
  • By frequency
  • By submitter
  • By 2 hit 2 allele

Details:

Chromosome Reference Position
11 104900488

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_033294 Link_out NP_150636 Link_out 1 L [Leu] / L [Leu]
coding-synonymous NM_001223 Link_out NP_001214 Link_out 1 L [Leu] / L [Leu]
coding-synonymous NM_033292 Link_out NP_150634 Link_out 1 L [Leu] / L [Leu]
coding-synonymous NM_033293 Link_out NP_150635 Link_out 1 L [Leu] / L [Leu]
intron NM_033295 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-TGCAGCACAAGCCTGGTATAACTGAATTGGGAAATGTTTTATTGACTCAGTAATGCCACTGTCTCTCTACAAGATAACTCTGGATGA
CTTCCTATAACACTTTCCTTCACCTTTCTTGAAACTAAGACTAAATTTTTTTTTGGCACCCTGTTGTTTGTCACGGAATTCCTTAAGAAA
CTCCTTAAGTATTTATTTATTGACTTTCCAAGGTACCATGATAGTTAATTACATAGTCGAAAATCAGTGATATGGTGTCTTTCAGGACAT
GACTACAGAGCTGGAGGCATTTGCACACCGCCCAGAGCACAAGACCTCTGACAGCACGTTCCTGGTGTTCATGTCTCATGGTATTCGGGA
AGGCATTTGTGGGAAGAAACACTCTGAGCAAGTCCCAGATATA C/T TACAACTCAATGCAATCTTTAACATGTTGAATACCAAGAACT
GCCCAAGTTTGAAGGACAAACCGAAGGTGATCATCATCCAGGCCTGCCGTGGTGGTGAGTGCTGATGCCTTTGAGAACACCAGACAATCA
AATACTATCCTACTCTGTATGCATCCAAGAATTTTTGGTTTCTTTTGGTTTGTCTTTTAATGTCAAAGAACACATACTGTCAGTATTCAA
GAATGCAGCTTCTGTGAATTGAATGGCTGGTTGGTAGATATTTATTCCATATTTAAGCTTGAGATTTTGATGTTTGGAAATTTTTACAAT
TTGTTTGATGGTTAGAAAAGATAAACATTGTTGAAAAGATTGTAACTGAAATGCATGTGTCTATTTGCATGTGAATTAATGATAGAGC-3
'

[Top]

RS ID: 539595 Link_out

Alleles: C/T

Validation:

  • By cluster
  • By frequency
  • By 2 hit 2 allele
  • By hap map

Details:

Chromosome Reference Position
11 104905047

Function Class mRNA Accession Protein Accession Reading Frame Amino Acids
coding-synonymous NM_001223 Link_out NP_001214 Link_out 3 T [Thr] / T [Thr]
coding-synonymous NM_033292 Link_out NP_150634 Link_out 3 T [Thr] / T [Thr]
intron NM_033294 Link_out Not Applicable Not Applicable Not Applicable
intron NM_033295 Link_out Not Applicable Not Applicable Not Applicable
intron NM_033293 Link_out Not Applicable Not Applicable Not Applicable

Source: dbSNP

Population Frequencies:

Not Completed

Sequence:

5'-ATGATCTCTGCTTTCCAGGGACTGATGTGGAAATGGTAAACTCAGTCTTCAGGTCACTCCATGCACATGTATGGAGACTATTGAGGG
AAACAAGTAGGACAGCAATACAGTAAGAAGAGGGATTACCCAACTGTGAGGAGGGGGACATTTCACTGATGAAATCTAAATGAGGTCACT
TTCTGTTGATTACATGAGAGGAATATGAGGCTGTTTTCATGATGTGAGAAATCCTTGTGCTCTAAACAGACAAGGTCCTGAAGGAGAAGA
GAAAGCTGTTTATCCGTTCCATGGGTGAAGGTACAATAAATGGCTTACTGGATGAATTATTACAGACAAGGGTGCTGAACAAGGAAGAGA
TGGAGAAAGTAAAACGTGAAAATGCTACAGTTATGGATAAGAC C/T CGAGCTTTGATTGACTCCGTTATTCCGAAAGGGGCACAGGCA
TGCCAAATTTGCATCACATACATTTGTGAAGAAGACAGTTACCTGGCAGGGACGCTGGGACTCTCAGCAGGTAAGGGTCAGTGACTTACA
CTCAAGTTCACCTAGGGCCTGTCTTCGTGCCTAACATTTGATTTCTTTACTAGTCATGTTAATTGGAAGAAAACTTTCTTATTTCTGGCT
TCAGGGCCATATTTCTGTAGCAGGGTCCCTATTGCATGTCCCTTGACTCTCCTTTGATTCTTTTCCTTAATCCTCAGTGGCACTCTTCTG
ATTAAAGCTCATTTCCTGTTCTGAGTATGTGGTAGCTCCTTTACTGAAGCTCTTGAGAACCATCTGAAAAGCTTCATGCTGTGTTTTC-3
'